Browse Element(s) Details


Os.53740.1.S1_at

Description gb:AK099643.1
DB_XREF= gi:32984852
TID=Os.53740.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060N23, full insert sequence.
FL= gb:AK099643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g098508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09820OsAffx.30909.1.S1_at11/1111+5247441..5250444expressed protein
LOC_Os11g09820Os.16598.1.S1_at11/1111+5247441..5250444expressed protein
LOC_Os11g09830Os.53312.1.S1_at11/1111+5253571..5254967expressed protein
LOC_Os11g09830Os.57200.1.S1_x_at6/1111+5253571..5254967expressed protein
LOC_Os11g09840OsAffx.7053.1.S1_at11/1111+5257617..5258948expressed protein
LOC_Os11g09850Os.53740.1.S1_s_at11/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.27601.1.A1_at10/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.53740.1.S1_at8/1111+5272112..5275433expressed protein
LOC_Os11g09860OsAffx.30910.2.S1_at11/1111+5275960..5276400hypothetical protein
LOC_Os11g09860OsAffx.30910.1.S1_x_at1/1111+5275960..5276400hypothetical protein
LOC_Os11g09870OsAffx.18770.1.S1_s_at11/1111+5280360..5280604hypothetical protein
LOC_Os11g09880NANA11+5285405..5285758hypothetical protein
LOC_Os11g09890OsAffx.30280.1.S1_x_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09890OsAffx.28492.1.S1_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09890OsAffx.27810.1.S1_x_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09900OsAffx.23502.4.S1_at11/1111+5291426..5294636hypothetical protein
LOC_Os11g09910NANA11+5296188..5297351hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53740.1.S1_at--115--2211Chr11:5273982..5274006 (25 bp)
ACAACAGTGCTGACATTACTTCATC
LOC_Os11g09850
Os.53740.1.S1_at--570--3271Chr11:5273983..5274007 (25 bp)
CAACAGTGCTGACATTACTTCATCA
LOC_Os11g09850
Os.53740.1.S1_at--829--2491Chr11:5273984..5274008 (25 bp)
AACAGTGCTGACATTACTTCATCAT
LOC_Os11g09850
Os.53740.1.S1_at--816--8691Chr11:5274008..5274028 (21 bp)
TGTGCTCCTGTTGGAAAGAGGCATA
LOC_Os11g09850
Os.53740.1.S1_at--858--7311Chr11:5274009..5274508 (25 bp)
GTGCTCCTGTTGGAAAGAGGCATAT
LOC_Os11g09850
Os.53740.1.S1_at--1055--9091Chr11:5274010..5274509 (25 bp)
TGCTCCTGTTGGAAAGAGGCATATG
LOC_Os11g09850
Os.53740.1.S1_at--612--4791Chr11:5274011..5274510 (25 bp)
GCTCCTGTTGGAAAGAGGCATATGT
LOC_Os11g09850
Os.53740.1.S1_at--619--3811NONE
CTCCTGTTGGAAAGAGGCATATGTC
NONE
Os.53740.1.S1_at--626--9271NONE
TCCTGTTGGAAAGAGGCATATGTCT
NONE
Os.53740.1.S1_at--154--4271NONE
CCTGTTGGAAAGAGGCATATGTCTT
NONE
Os.53740.1.S1_at--481--3871Chr11:5274015..5274514 (25 bp)
CTGTTGGAAAGAGGCATATGTCTTC
LOC_Os11g09850
Target Sequence 
ACAACAGTGCTGACATTACTTCATCATGTGCTCCTGTTGGAAAGAGGCATATGTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis