Browse Element(s) Details

Os.53743.1.S1_at

Description

gb:AK099657.1
DB_XREF= gi:32984866
TID=Os.53743.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066C21, full insert sequence.
FL= gb:AK099657.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os04g52614	10/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os04g52580	OsAffx.26575.1.S1_at	11/11	4	+	31041029..31043375	TPR Domain containing protein
LOC_Os04g52590	OsAffx.14379.1.S1_x_at	11/11	4	+	31044044..31051830	Protein kinase domain containing protein, expressed
LOC_Os04g52590	Os.18323.1.S1_at	11/11	4	+	31044044..31051830	Protein kinase domain containing protein, expressed
LOC_Os04g52590	OsAffx.15019.1.S1_s_at	1/11	4	+	31044044..31051830	Protein kinase domain containing protein, expressed
LOC_Os04g52600	Os.27773.1.S1_at	5/11	4	+	31055719..31063217	Protein kinase domain containing protein, expressed
LOC_Os04g52600	OsAffx.4157.1.S1_at	1/11	4	+	31055719..31063217	Protein kinase domain containing protein, expressed
LOC_Os04g52600	OsAffx.4157.1.S1_x_at	1/11	4	+	31055719..31063217	Protein kinase domain containing protein, expressed
LOC_Os04g52600	Os.27084.2.S1_at	1/11	4	+	31055719..31063217	Protein kinase domain containing protein, expressed
LOC_Os04g52600	Os.27084.2.S1_x_at	1/11	4	+	31055719..31063217	Protein kinase domain containing protein, expressed
LOC_Os04g52614	OsAffx.4157.1.S1_at	11/11	4	+	31066297..31088605	Protein kinase domain containing protein, expressed
LOC_Os04g52614	OsAffx.4157.1.S1_x_at	11/11	4	+	31066297..31088605	Protein kinase domain containing protein, expressed
LOC_Os04g52614	Os.27242.1.S1_x_at	11/11	4	+	31066297..31088605	Protein kinase domain containing protein, expressed
LOC_Os04g52614	Os.27242.1.S1_at	11/11	4	+	31066297..31088605	Protein kinase domain containing protein, expressed
LOC_Os04g52614	Os.53743.1.S1_at	10/11	4	+	31066297..31088605	Protein kinase domain containing protein, expressed
LOC_Os04g52614	Os.54061.1.S1_x_at	10/11	4	+	31066297..31088605	Protein kinase domain containing protein, expressed
LOC_Os04g52614	Os.27084.2.S1_at	1/11	4	+	31066297..31088605	Protein kinase domain containing protein, expressed
LOC_Os04g52614	Os.27084.2.S1_x_at	1/11	4	+	31066297..31088605	Protein kinase domain containing protein, expressed
LOC_Os04g52614	Os.17112.1.S1_at	1/11	4	+	31066297..31088605	Protein kinase domain containing protein, expressed
LOC_Os04g52630	Os.52059.1.S1_at	11/11	4	+	31089687..31091174	Protein kinase domain containing protein, expressed
LOC_Os04g52630	Os.27084.2.S1_at	1/11	4	+	31089687..31091174	Protein kinase domain containing protein, expressed
LOC_Os04g52630	OsAffx.4157.1.S1_x_at	1/11	4	+	31089687..31091174	Protein kinase domain containing protein, expressed
LOC_Os04g52630	Os.27084.2.S1_x_at	1/11	4	+	31089687..31091174	Protein kinase domain containing protein, expressed
LOC_Os04g52640	Os.27084.2.S1_a_at	11/11	4	+	31098527..31108979	SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640	Os.27084.1.A1_a_at	11/11	4	+	31098527..31108979	SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640	Os.27084.2.S1_at	11/11	4	+	31098527..31108979	SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640	Os.27084.2.S1_x_at	11/11	4	+	31098527..31108979	SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640	Os.27084.1.A2_at	10/11	4	+	31098527..31108979	SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640	Os.47793.1.A1_at	6/11	4	+	31098527..31108979	SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52650	Os.7420.1.S1_s_at	11/11	4	+	31110670..31112273	expressed protein
LOC_Os04g52650	OsAffx.26576.1.S1_at	10/11	4	+	31110670..31112273	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0016020	cellular_component	membrane
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53743.1.S1_at--491--247	1	Chr04:31066542..31066566 (25 bp)	AACACATATTTAACTTGCATGCGAG	LOC_Os04g52614
Os.53743.1.S1_at--827--1073	1	Chr04:31066528..31066552 (25 bp)	TTGCATGCGAGAAACACATCACCAT	LOC_Os04g52614
Os.53743.1.S1_at--181--247	1	Chr04:31066516..31066540 (25 bp)	AACACATCACCATATTTAACTATTG	LOC_Os04g52614
Os.53743.1.S1_at--923--591	1	Chr04:31066455..31066479 (25 bp)	GAGCTAGTAGTTGGCAGCTTGCATC	LOC_Os04g52614
Os.53743.1.S1_at--302--119	1	Chr04:31066450..31066474 (25 bp)	AGTAGTTGGCAGCTTGCATCGGCAA	LOC_Os04g52614
Os.53743.1.S1_at--722--1087	1	Chr04:31066445..31066469 (25 bp)	TTGGCAGCTTGCATCGGCAACGAGG	LOC_Os04g52614
Os.53743.1.S1_at--1107--761	1	Chr04:31066382..31066406 (25 bp)	GGGACAATGTGGGTCCCATTGTAAT	LOC_Os04g52614
Os.53743.1.S1_at--603--295	1	Chr04:31066377..31066401 (25 bp)	AATGTGGGTCCCATTGTAATATTTT	LOC_Os04g52614
Os.53743.1.S1_at--85--1037	1	Chr04:31066352..31066376 (25 bp)	TTTTATTTTTATCGGACACTCACTG	LOC_Os04g52614
Os.53743.1.S1_at--911--1037	2	Chr04:31066346..31066370 (25 bp)	TTTTATCGGACACTCACTGACATGT	LOC_Os04g52614
Os.53743.1.S1_at--655--33	1	Chr04:31066297..31066321 (25 bp)	ATAAATGATACGTCAACGTTACGTG	NONE

Target Sequence

AACACATATTTAACTTGCATGCGAGAAACACATCACCATATTTAACTATTGTATGAATAAGCGATTAGATTGTCTATAGA
TGATTTGGAGCTAGTAGTTGGCAGCTTGCATCGGCAACGAGGAAAGGGAGAGAGATGAGGAAGGGAGAAAAGATGAGAGG
GGGACAATGTGGGTCCCATTGTAATATTTTTTTTATTTTTATCGGACACTCACTGACATGTGGGTCCTAACTTTTTTTTT
TTACTATAAATGATACGTCAACGTTACGTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis