Browse Element(s) Details


Os.53794.1.S1_at

Description gb:AK100101.1
DB_XREF= gi:32985310
TID=Os.53794.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004I20, full insert sequence.
FL= gb:AK100101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3841011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein
LOC_Os08g38400Os.8615.1.S1_at11/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38400Os.50452.2.S1_x_at1/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38410Os.26860.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38410Os.53794.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38420OsAffx.17401.1.S1_at11/118+24188202..24188492hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_x_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38440OsAffx.17402.1.S1_at11/118+24193968..24199447C2 domain containing protein, expressed
LOC_Os08g38450NANA8+24200711..24201460hypothetical protein
LOC_Os08g38460Os.52151.1.S1_at11/118+24203170..24204185Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53794.1.S1_at--590--3051Chr08:24181054..24181078 (25 bp)
AATCGATGTCCGGATTCAGCCGATG
LOC_Os08g38410
Os.53794.1.S1_at--354--1091Chr08:24180982..24181006 (25 bp)
AGTGGCCCAGCTTGAAATCCTGCAA
LOC_Os08g38410
Os.53794.1.S1_at--833--8851Chr08:24180952..24180976 (25 bp)
TGATCGCCTGGGACATGCTGATGTA
LOC_Os08g38410
Os.53794.1.S1_at--756--4731Chr08:24180936..24180960 (25 bp)
GCTGATGTAGCCGTACGTCTTGAAG
LOC_Os08g38410
Os.53794.1.S1_at--794--9431Chr08:24180863..24180887 (25 bp)
TCGGTGATCACGTTCAGCCCAGGTT
LOC_Os08g38410
Os.53794.1.S1_at--1086--10851Chr08:24180757..24180781 (25 bp)
TTGGTAGCTACTTCTTCTCCTAGAA
LOC_Os08g38410
Os.53794.1.S1_at--574--8371Chr08:24180645..24180669 (25 bp)
GGCGCTACGTCTCTAGAGCTAGGTC
LOC_Os08g38410
Os.53794.1.S1_at--2--5731Chr08:24180630..24180654 (25 bp)
GAGCTAGGTCGTTTTTTAGGTCGCT
LOC_Os08g38410
Os.53794.1.S1_at--198--10091Chr08:24180614..24180638 (25 bp)
TAGGTCGCTTCTTCTGTTGTGAGAA
LOC_Os08g38410
Os.53794.1.S1_at--1033--911Chr08:24180588..24180612 (25 bp)
AGGCTTTAGCTCTTCCTATCTAGTA
LOC_Os08g38410
Os.53794.1.S1_at--106--4291Chr08:24180554..24180578 (25 bp)
CCTGCTGTTCTTAGTTTTGGGCTGT
LOC_Os08g38410
Target Sequence 
AATCGATGTCCGGATTCAGCCGATGGGGGCTCACCTGGACGATGAACATGGAGCGTGGTGGGATCTTCATGTAGTGGCCC
AGCTTGAAATCCTGCAAGAACATGATCGCCTGGGACATGCTGATGTAGCCGTACGTCTTGAAGGCGACGTTGGCGAGCGG
CCTCCCCGGGTACAGGTATCCGATGATCAGCTCGGTGATCACGTTCAGCCCAGGTTGCTGTCCAAGAAACCAAAAAGAAC
CATAAATTGATCACGAATTCACTATTCATGAGTTTAAGAACATCTCTGAGGGAGCTTTTGGTAGCTACTTCTTCTCCTAG
AATCAAAGTCTCTTTCAAATAATCCCTTTCTTTTTTGGCCATACTAAAAAATTGTAATTGTAGAATTGAAAAAATAACGC
CGCAGTGCCGGCGCTACGTCTCTAGAGCTAGGTCGTTTTTTAGGTCGCTTCTTCTGTTGTGAGAATAGGCTTTAGCTCTT
CCTATCTAGTATTCCCGTCCCCTGCTGTTCTTAGTTTTGGGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis