Browse Element(s) Details


Os.53822.1.S1_x_at

Description gb:AK100259.1
DB_XREF= gi:32985468
TID=Os.53822.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062G17, full insert sequence.
FL= gb:AK100259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5244011/11aminotransferase, class III family protein, expressed
LOC_Os04g524501/11aminotransferase, class III family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52410Os.57418.1.S1_at11/114+30924033..30925135MADS-box protein ZMM17, putative, expressed
LOC_Os04g52420OsAffx.4155.1.S1_at11/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.28375.1.S1_s_at2/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.20689.1.A1_x_at1/114+30927916..30935621hypothetical protein
LOC_Os04g52430OsAffx.26572.1.S1_at11/114+30941815..30944324expressed protein
LOC_Os04g52430OsAffx.25952.1.S1_s_at1/114+30941815..30944324expressed protein
LOC_Os04g52440Os.53822.1.S1_x_at11/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52440OsAffx.26573.1.S1_x_at1/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.14095.1.S1_at11/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450OsAffx.26573.1.S1_x_at10/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.53822.1.S1_x_at1/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52460Os.9644.1.S1_at11/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.48346.1.S1_at10/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.38093.1.S1_at3/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009102biological_processbiotin biosynthesis
GO:0009860biological_processpollen tube growth
GO:0009865biological_processpollen tube adhesion
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003867molecular_function4-aminobutyrate transaminase activity
GO:0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53822.1.S1_x_at--1023--2811Chr04:30953829..30953927 (25 bp)
AAGATTGGCTTTTTTGCTCATGGCT
LOC_Os04g52440
Os.53822.1.S1_x_at--658--9091Chr04:30953917..30953941 (25 bp)
TGCTCATGGCTTTACATACTCTGGC
LOC_Os04g52440
Os.53822.1.S1_x_at--394--8151Chr04:30954086..30954110 (25 bp)
GGAAAGGAACATCCCTGCTCATGTC
LOC_Os04g52440
Os.53822.1.S1_x_at--259--2732Chr04:30961969..30961993 (25 bp)
AAGCAAATTTCTCCAAGGTTCCAGG
LOC_Os04g52450
Os.53822.1.S1_x_at--711--5231Chr04:30954139..30954163 (25 bp)
GAATCAAGGCCTTCGCGGGAAGTTC
LOC_Os04g52440
Os.53822.1.S1_x_at--579--3291Chr04:30954790..30954814 (25 bp)
CAAATGATCCATTTCCTGTTGAGTG
LOC_Os04g52440
Os.53822.1.S1_x_at--730--10851Chr04:30955290..30955314 (25 bp)
TTGGAGATGAGATCGCCATGTCGCC
LOC_Os04g52440
Os.53822.1.S1_x_at--470--8991Chr04:30955461..30955485 (25 bp)
TGAAGCTTTGAAGGCCACCGAGGAA
LOC_Os04g52440
Os.53822.1.S1_x_at--1040--7511Chr04:30955489..30955513 (25 bp)
GTGGCAGAGCTGAGGTCCAAGAAAA
LOC_Os04g52440
Os.53822.1.S1_x_at--942--2231Chr04:30955559..30955583 (25 bp)
ACAATTTTTGTAAGCTGGTGCACAC
LOC_Os04g52440
Os.53822.1.S1_x_at--207--91Chr04:30955614..30955638 (25 bp)
ATTCGCTGAAATGTTACTTCTTGCA
LOC_Os04g52440
Target Sequence 
AAGATTGGCTTTTTTGCTCATGGCTTTACATACTCTGGCCATCCAGTTTCTTGTGCTGTCGCCCTAGAAGCTCTGAAAAT
TTATCGGGAAAGGAACATCCCTGCTCATGTCAAGCAAATTTCTCCAAGGTTCCAGGAGGGAATCAAGGCCTTCGCGGGAA
GTTCAATTATAGGAGAGACACGTGGTGTANGNTTNNTGCTCGCGACTGAATTTGCTAATAACAAATCACCAAATGATCCA
TTTCCTGTTGAGTGGGGAGTTGCGCAAATCTTTGGAGCAGAGTGTAAGAAGCGTGGTATGCTAGTTAAGGTTGTTGGAGA
TGAGATCGCCATGTCGCCACCACTAATAATGAGCCAAAGAGAAGTTGATGGACTGGTGAGCATATACGGTGAAGCTTTGA
AGGCCACCGAGGAAAGAGTGGCAGAGCTGAGGTCCAAGAAAAAATAGTTAAGAGACATTTGTTGTAAAAATAATGATAAT
ATTACCAACAATTTTTGTAAGCTGGTGCACACAATAATTTTGTGTTGTTTTTTATTCTAATAATTCGCTGAAATGTTACT
TCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53822.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis