Browse Element(s) Details


Os.53844.1.S1_at

Description gb:AK100368.1
DB_XREF= gi:32985577
TID=Os.53844.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084A02, full insert sequence.
FL= gb:AK100368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0484011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04790Os.11192.1.S1_at10/116+2087542..2089992Acid phosphatase 1 precursor, putative, expressed
LOC_Os06g04800Os.54403.1.S1_at11/116+2090290..2093673Proteasome subunit beta type 6 precursor, putative, expressed
LOC_Os06g04810OsAffx.27458.1.S1_at11/116+2094929..2097814Leucine Rich Repeat family protein
LOC_Os06g04820Os.25025.1.S1_at11/116+2099282..2104395Leucine carboxyl methyltransferase family protein, expressed
LOC_Os06g04820Os.22618.1.S1_at2/116+2099282..2104395Leucine carboxyl methyltransferase family protein, expressed
LOC_Os06g04830OsAffx.15265.1.S1_at11/116+2106122..2109064Leucine Rich Repeat family protein, expressed
LOC_Os06g04840Os.53844.1.S1_at11/116+2111540..2115562Leucine Rich Repeat family protein, expressed
LOC_Os06g04850Os.37618.1.S1_at11/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04850Os.49759.1.S1_x_at1/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04860OsAffx.4724.1.S1_at11/116+2135048..2135555hypothetical protein
LOC_Os06g04860Os.28079.1.S1_x_at1/116+2135048..2135555hypothetical protein
LOC_Os06g04860Os.28079.2.S1_x_at1/116+2135048..2135555hypothetical protein
LOC_Os06g04870Os.2365.1.S1_at11/116+2136451..2138092SlHDL2, putative, expressed
LOC_Os06g04870Os.49759.1.S1_x_at1/116+2136451..2138092SlHDL2, putative, expressed
LOC_Os06g04880Os.26392.1.S1_at11/116+2139054..2145617U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53844.1.S1_at--320--7911Chr06:2112067..2112091 (25 bp)
GGATTTCTATCTGGACTAACGGGTT
LOC_Os06g04840
Os.53844.1.S1_at--209--7331Chr06:2111974..2111998 (25 bp)
GTGCTTGATCTCTCCAGGAATGATC
LOC_Os06g04840
Os.53844.1.S1_at--723--4331Chr06:2111961..2111985 (25 bp)
CCAGGAATGATCTGTCAGGCCCAAT
LOC_Os06g04840
Os.53844.1.S1_at--95--3171Chr06:2111939..2111963 (25 bp)
AATTCCACAGTGCTTCCTGTCATTG
LOC_Os06g04840
Os.53844.1.S1_at--420--9271Chr06:2111925..2111949 (25 bp)
TCCTGTCATTGTCTGGTTTGAGCCA
LOC_Os06g04840
Os.53844.1.S1_at--135--5831Chr06:2111881..2111905 (25 bp)
GACCTTTCAGGAGCTATACCATTTG
LOC_Os06g04840
Os.53844.1.S1_at--879--2031Chr06:2111741..2111765 (25 bp)
ACTTAAGTGCACTGCTTGGGTTTGC
LOC_Os06g04840
Os.53844.1.S1_at--931--151Chr06:2111703..2111727 (25 bp)
ATTATGTTCGTCATCCTGATACCCT
LOC_Os06g04840
Os.53844.1.S1_at--68--571Chr06:2111691..2111715 (25 bp)
ATCCTGATACCCTACATGGTTGCAT
LOC_Os06g04840
Os.53844.1.S1_at--251--5571Chr06:2111666..2111690 (25 bp)
GAAAGACTCTTATGATAGCCTATGC
LOC_Os06g04840
Os.53844.1.S1_at--1161--4651Chr06:2111547..2111571 (25 bp)
GCGGTGTAATGCACTAAGGCTTAGC
LOC_Os06g04840
Target Sequence 
GGATTTCTATCTGGACTAACGGGTTTAAATTTGTCAGGAAATCACATAAGAGGGAGCATTCCAGAGGAGTTGGGAAACTT
AAGAAGTTTAGAGGTGCTTGATCTCTCCAGGAATGATCTGTCAGGCCCAATTCCACAGTGCTTCCTGTCATTGTCTGGTT
TGAGCCATCTGAATTTATCATACAATGACCTTTCAGGAGCTATACCATTTGGAAATGAACTTGCAACTTTTGCAGAAAGC
ACATACTTTGGTAATGCACATACAACTGTCAAGAAGCTGTTTGTACCACAAAAGGAAGCATCAACTAAACTTTGACACGG
GAACATACTTAAGTGCACTGCTTGGGTTTGCATTTGGATTCTGTATTATGTTCGTCATCCTGATACCCTACATGGTTGCA
TGAAAGACTCTTATGATAGCCTATGCTTTGGATTGGCTATTATGATATATGAAGATTTTGTTTTATAGTTAGTTGAGCAT
TGTAATGATTTTATCCGAACATATTTGACAGGTGGGTTAAGCGGTGTAATGCACTAAGGCTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis