Browse Element(s) Details


Os.53853.1.S1_at

Description gb:AK100407.1
DB_XREF= gi:32985616
TID=Os.53853.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087D12, full insert sequence.
FL= gb:AK100407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1149011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11470Os.26874.1.S1_at11/113+5899030..5910488Activating signal cointegrator 1 complex subunit 3, putative, expressed
LOC_Os03g11480Os.23973.1.A1_at9/113+5920919..5922792expressed protein
LOC_Os03g11490Os.53853.1.S1_at11/113+5925495..5934562expressed protein
LOC_Os03g11490Os.37936.2.S1_a_at3/113+5925495..5934562expressed protein
LOC_Os03g11500Os.23247.1.A1_at6/113+5934738..5939720expressed protein
LOC_Os03g11510Os.54293.1.S1_at11/113+5939908..5943832Mitochondrial carrier protein, expressed
LOC_Os03g11520Os.49152.1.S1_x_at11/113+5946303..5952831hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g11530Os.15126.1.S1_at10/113+5953034..5958191diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os03g11540Os.1376.1.S1_at11/113+5958709..5962209replication factor-a protein 1 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53853.1.S1_at--320--4831Chr03:5933488..5933512 (25 bp)
GCTCAGAGGAGCGTTTGTTTCCAAA
LOC_Os03g11490
Os.53853.1.S1_at--100--10611Chr03:5933525..5933549 (25 bp)
TTCTGATATTCTGAGCTCTTCGGCG
LOC_Os03g11490
Os.53853.1.S1_at--667--9571Chr03:5933541..5933565 (25 bp)
TCTTCGGCGGCTTCTAATGCGAACA
LOC_Os03g11490
Os.53853.1.S1_at--913--9131Chr03:5933558..5933582 (25 bp)
TGCGAACACAAATGCTTCACCCAAG
LOC_Os03g11490
Os.53853.1.S1_at--567--6011Chr03:5934129..5934153 (25 bp)
GAGAGATCACCCAGAATCACCCGAG
LOC_Os03g11490
Os.53853.1.S1_at--749--5271Chr03:5934189..5934213 (25 bp)
GAATGGGCGCATAGCTCTAAACAGA
LOC_Os03g11490
Os.53853.1.S1_at--188--2231Chr03:5934273..5934297 (25 bp)
ACAAGTGTCAGGTCCTACAGTACTG
LOC_Os03g11490
Os.53853.1.S1_at--478--10131Chr03:5934354..5934378 (25 bp)
TATGCAGCGAAGAGTTCCCAACGGG
LOC_Os03g11490
Os.53853.1.S1_at--107--7551Chr03:5934386..5934410 (25 bp)
GTGGCGCTCCATATCATTTGTTTTA
LOC_Os03g11490
Os.53853.1.S1_at--256--2331Chr03:5934458..5934482 (25 bp)
AAAGTGCGCAGCTTTGGGTTTCTTG
LOC_Os03g11490
Os.53853.1.S1_at--853--6951Chr03:5934489..5934513 (25 bp)
GTAGCTAACGAGTAACCTGGTACCA
LOC_Os03g11490
Target Sequence 
GCTCAGAGGAGCGTTTGTTTCCAAAGACCAGGCTTCTTTCTGATATTCTGAGCTCTTCGGCGGCTTCTAATGCGAACACA
AATGCTTCACCCAAGCCTACAAGCAAGTTTCATGATGCACCAGACAACCAAATACAGGACAGAAAGAGAGATCACCCAGA
ATCACCCGAGCCTTCTCCTGCAGATACACTCAAAAGGCTCAGGGTGAATGGGCGCATAGCTCTAAACAGAGTCATGGATC
GTCGAACATTGAGTTCCCAACCAATCTCAAGGGAAGGATTAGTTGATATACAAGTGTCAGGTCCTACAGTACTGACGAGA
AGCAAATGCTGTAGTTGGCAACATTTCAGGTGATGAATGTGCATGTTTTGTATGCAGCGAAGAGTTCCCAACGGGGTGAT
TTGTGGCGCTCCATATCATTTGTTTTAAGCAACAGGAAGCGGCACCTTTTCGTTTTAAGCAACACTTGTTAACAAAAGTG
CGCAGCTTTGGGTTTCTTGCGAGGTGTAGCTAACGAGTAACCTGGTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis