Browse Element(s) Details


Os.53877.1.S1_x_at

Description gb:AK100567.1
DB_XREF= gi:32985776
TID=Os.53877.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104M20, full insert sequence.
FL= gb:AK100567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3967010/11seryl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39630OsAffx.19257.1.S1_at11/1111+23100472..23102972hypothetical protein
LOC_Os11g39640Os.27217.1.A1_at11/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39640OsAffx.13463.1.S1_at1/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39650Os.20727.1.S1_at11/1111+23113750..23117939St12p protein, putative, expressed
LOC_Os11g39660OsAffx.19258.2.S1_x_at11/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660OsAffx.24518.2.S1_x_at2/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660Os.57200.1.S1_x_at1/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39670Os.54818.1.S1_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39670Os.53877.1.S1_x_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39680OsAffx.31391.1.S1_at11/1111+23134150..23134689hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_x_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39699OsAffx.30582.1.S1_s_at2/1111+23146586..23147544NA
LOC_Os11g39710NANA11+23150100..23151986retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006434biological_processseryl-tRNA aminoacylation
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043039biological_processtRNA aminoacylation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004828molecular_functionserine-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53877.1.S1_x_at--721--8171Chr11:23129994..23130018 (25 bp)
GGAACTTTATGCATCACTTGGACTT
LOC_Os11g39670
Os.53877.1.S1_x_at--442--7631Chr11:23130125..23130149 (25 bp)
GGGAGCACCGGCCTACAGAAAGTTT
LOC_Os11g39670
Os.53877.1.S1_x_at--770--9931Chr11:23130183..23130294 (25 bp)
TACGGTGAGATCTCGAGCGCGTCAA
LOC_Os11g39670
Os.53877.1.S1_x_at--1139--5871Chr11:23130284..23130308 (25 bp)
GAGCGCGTCAAACTGCACAGACTAT
LOC_Os11g39670
Os.53877.1.S1_x_at--411--8811Chr11:23130437..23130461 (25 bp)
TGTTCCTCGCTTGATCATATGCATC
LOC_Os11g39670
Os.53877.1.S1_x_at--931--8171Chr11:23130486..23130510 (25 bp)
GGAACGGTTGTGATCCCAGAGCCAC
LOC_Os11g39670
Os.53877.1.S1_x_at--1068--8831Chr11:23130558..23130582 (25 bp)
TGATCAGCTTGAAGGTCACCACGTT
LOC_Os11g39670
Os.53877.1.S1_x_at--4--7111Chr11:23130572..23130596 (25 bp)
GTCACCACGTTTACTTCGAATCTTG
LOC_Os11g39670
Os.53877.1.S1_x_at--120--7811Chr11:23130675..23130698 (24 bp)
GGTCGATTCCAAATGTTCCATGCGG
LOC_Os11g39670
Os.53877.1.S1_x_at--222--3531NONE
CATGCGGAATTCGTGGCTGTTAGTT
NONE
Os.53877.1.S1_x_at--67--8791Chr11:23130710..23130734 (25 bp)
TGTTAGTTGGCCACCGATTGTCGAT
LOC_Os11g39670
Target Sequence 
GGAACTTTATGCATCACTTGGACTTCATTTCAAAACTTTGGATATGGCGACTGGGGATCTGGGAGCACCGGCCTACAGAA
AGTTTGACATTGAGGCATGGATGCCAGGCCTAGATAGGTACGGTGAGATCTCGAGCGCGTCAAACTGCACAGACTATCAG
AGCAGGCGGCTGGGCATCCGGTTTCGCCCATCACCTGCAGATCCTCCACCGGCGAACGCCAAGAAAGGAAAGGGCAGCTC
AGGCCCAACACAGTTTGTCCACACGCTCAACGCGACAGCGGTTGCTGTTCCTCGCTTGATCATATGCATCCTGGAGAACT
TTCAGCAAGAAGATGGAACGGTTGTGATCCCAGAGCCACTGAGGCCCTTCATGGGCGGACTTGAAGTGCTCTCCCCGAAA
ACCAAATGATCAGCTTGAAGGTCACCACGTTTACTTCGAATCTTGTTTTTTTTATAGATTTACAGTCTTTTTTTCCCCCG
AGGATATTGGCAAGTGAATGTGCAGAATTTCAAAGAAATCTGTGGTCGATTCCAAATGTTCCATGCGGAATTCGTGGCTG
TTAGTTGGCCACCGATTGTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53877.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis