Browse Element(s) Details


Os.53897.1.S1_at

Description gb:AK100690.1
DB_XREF= gi:32985899
TID=Os.53897.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114F23, full insert sequence.
FL= gb:AK100690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3240611/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32380Os.18231.1.S1_at10/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32380Os.49161.1.S1_at1/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32390Os.24598.1.S1_at11/117+19251206..19256295Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g32400Os.18593.2.S1_a_at11/117+19257047..19266589GCK-like kinase MIK, putative, expressed
LOC_Os07g32406OsAffx.28710.1.S1_x_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32406Os.53897.1.S1_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32412Os.9035.1.S1_at11/117+19274830..19279826calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32420Os.32948.1.S1_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.32948.1.S1_s_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.23172.1.S1_x_at1/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32430Os.14760.1.S1_at11/117+19289201..19297400Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53897.1.S1_at--193--511Chr07:19270333..19270357 (25 bp)
ATCGTGCTGTGAATCTGCGGCCGCT
LOC_Os07g32406
Os.53897.1.S1_at--182--9651Chr07:19270301..19270325 (25 bp)
TCAGCTTTGCTACTAGCCTACCAGT
LOC_Os07g32406
Os.53897.1.S1_at--123--9991Chr07:19270288..19270312 (25 bp)
TAGCCTACCAGTAGTGCTACCTTTG
LOC_Os07g32406
Os.53897.1.S1_at--430--4851Chr07:19270273..19270297 (25 bp)
GCTACCTTTGCAGTGAACTACGGTT
LOC_Os07g32406
Os.53897.1.S1_at--780--2491Chr07:19270258..19270282 (25 bp)
AACTACGGTTGTGTTCGGTGTCCAT
LOC_Os07g32406
Os.53897.1.S1_at--619--8671Chr07:19270249..19270273 (25 bp)
TGTGTTCGGTGTCCATGTGTCATGT
LOC_Os07g32406
Os.53897.1.S1_at--641--7431Chr07:19270233..19270257 (25 bp)
GTGTCATGTGTGTTAGGCTTAGGCA
LOC_Os07g32406
Os.53897.1.S1_at--492--1391Chr07:19270209..19270233 (25 bp)
AGACGGTCGAAGAGCTCTGGTACTG
LOC_Os07g32406
Os.53897.1.S1_at--781--3891Chr07:19270193..19270217 (25 bp)
CTGGTACTGGTACTTACTCCTATGT
LOC_Os07g32406
Os.53897.1.S1_at--749--9911Chr07:19270179..19270203 (25 bp)
TACTCCTATGTATGTCGTTGATCGT
LOC_Os07g32406
Os.53897.1.S1_at--501--7211Chr07:19270166..19270190 (25 bp)
GTCGTTGATCGTTGAATTCAGGTTA
LOC_Os07g32406
Target Sequence 
ATCGTGCTGTGAATCTGCGGCCGCTGCTCTCATCAGCTTTGCTACTAGCCTACCAGTAGTGCTACCTTTGCAGTGAACTA
CGGTTGTGTTCGGTGTCCATGTGTCATGTGTGTTAGGCTTAGGCAGACGGTCGAAGAGCTCTGGTACTGGTACTTACTCC
TATGTATGTCGTTGATCGTTGAATTCAGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis