Browse Element(s) Details


Os.53910.1.S1_at

Description gb:AK100779.1
DB_XREF= gi:32985988
TID=Os.53910.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120F24, full insert sequence.
FL= gb:AK100779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3519011/11expressed protein
LOC_Os10g315501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35140Os.10031.1.S1_at11/115+20786939..20790582MtN3/saliva family protein, expressed
LOC_Os05g35150OsAffx.22438.1.S1_x_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35150OsAffx.22438.1.S1_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35160OsAffx.17964.1.S1_x_at11/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_x_at2/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_at1/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35170Os.12020.1.S1_at11/115+20797137..20801255No apical meristem protein, expressed
LOC_Os05g35180NANA5+20803162..20808375retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35190Os.23679.1.A1_s_at11/115+20810915..20814702expressed protein
LOC_Os05g35190Os.53910.1.S1_at11/115+20810915..20814702expressed protein
LOC_Os05g35200Os.11691.1.S1_at11/115+20815122..20820452secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os05g35210OsAffx.14970.1.S1_at11/115+20830729..20831139hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53910.1.S1_at--983--7371Chr05:20814232..20814256 (25 bp)
GTGAGTTATGATAATGGCTACCTTC
LOC_Os05g35190
Os.53910.1.S1_at--833--2952Chr05:20814244..20814268 (25 bp)
AATGGCTACCTTCATTTCTCTATCC
LOC_Os05g35190
Os.53910.1.S1_at--1006--3711Chr05:20814249..20814273 (25 bp)
CTACCTTCATTTCTCTATCCACAAA
LOC_Os05g35190
Os.53910.1.S1_at--615--911Chr05:20814275..20814299 (25 bp)
AGGCAAAACTATGTACTCCTATTTA
LOC_Os05g35190
Os.53910.1.S1_at--402--1991Chr05:20814289..20814313 (25 bp)
ACTCCTATTTAAGAAGTATCACTAG
LOC_Os05g35190
Os.53910.1.S1_at--848--6891Chr05:20814304..20814328 (25 bp)
GTATCACTAGATTTGACCAGCTTTT
LOC_Os05g35190
Os.53910.1.S1_at--108--6531Chr05:20814313..20814337 (25 bp)
GATTTGACCAGCTTTTCACATTCCA
LOC_Os05g35190
Os.53910.1.S1_at--994--8911Chr05:20814317..20814341 (25 bp)
TGACCAGCTTTTCACATTCCAATTT
LOC_Os05g35190
Os.53910.1.S1_at--45--4891Chr05:20814323..20814347 (25 bp)
GCTTTTCACATTCCAATTTCACAGG
LOC_Os05g35190
Os.53910.1.S1_at--157--2071Chr05:20814330..20814354 (25 bp)
ACATTCCAATTTCACAGGTTGGCGA
LOC_Os05g35190
Os.53910.1.S1_at--401--4391Chr05:20814335..20814359 (25 bp)
CCAATTTCACAGGTTGGCGAAAGAT
LOC_Os05g35190
Target Sequence 
GTGAGTTATGATAATGGCTACCTTCATTTCTCTATCCACAAAAAGGCAAAACTATGTACTCCTATTTAAGAAGTATCACT
AGATTTGACCAGCTTTTCACATTCCAATTTCACAGGTTGGCGAAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis