Browse Element(s) Details


Os.53937.1.S1_x_at

Description gb:AK100940.1
DB_XREF= gi:32986149
TID=Os.53937.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023138C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138C13, full insert sequence.
FL= gb:AK100940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4370011/11SCP-like extracellular protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43649Os.15614.1.S1_at1/1112+27087329..27088085NA
LOC_Os12g43660Os.53319.1.S1_at11/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43660OsAffx.2477.1.S1_x_at1/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43670Os.47923.2.A1_at9/1112+27098644..27101104Erg28 like protein, expressed
LOC_Os12g43680NANA12+27107237..27108141transposon protein, putative, unclassified
LOC_Os12g43700Os.53937.1.S1_x_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700Os.53937.1.S1_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700OsAffx.30671.1.S1_x_at2/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43710OsAffx.32179.1.S1_at10/1112+27117322..27118698hypothetical protein
LOC_Os12g43720Os.54341.1.S1_at11/1112+27120899..27126815early-responsive to dehydration protein, putative, expressed
LOC_Os12g43730OsAffx.7882.1.S1_x_at1/1112+27128865..27132954expressed protein
LOC_Os12g43740NANA12+27135120..27136028oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53937.1.S1_x_at--1100--8531Chr12:27112941..27112965 (25 bp)
TGGAGCACTCTCATGGCCCCTACGG
LOC_Os12g43700
Os.53937.1.S1_x_at--42--5771Chr12:27112852..27112876 (25 bp)
GACGAGAAGAAGAGCTACGACTACA
LOC_Os12g43700
Os.53937.1.S1_x_at--1068--9891Chr12:27112837..27112861 (25 bp)
TACGACTACAAATCCAACAGCTGCA
LOC_Os12g43700
Os.53937.1.S1_x_at--122--1811Chr12:27112786..27112810 (25 bp)
ACCGCCATCGTCTGGAAGAACACCA
LOC_Os12g43700
Os.53937.1.S1_x_at--1035--8372Chr10:18086839..18086863 (25 bp)
GGCGACACCATCATGGTCTGCAGCT
NONE
Os.53937.1.S1_x_at--824--412Chr10:18086848..18086872 (25 bp)
ATCATGGTCTGCAGCTACTGGCCGC
NONE
Os.53937.1.S1_x_at--191--8371Chr12:27112678..27112702 (25 bp)
GGCGTCAAGCCCTACTAATTCATTC
LOC_Os12g43700
Os.53937.1.S1_x_at--334--4551Chr12:27112670..27112694 (25 bp)
GCCCTACTAATTCATTCTTCATCAT
LOC_Os12g43700
Os.53937.1.S1_x_at--1110--411Chr12:27112600..27112624 (25 bp)
ATCATCGATCGATCGTCATCCATGC
LOC_Os12g43700
Os.53937.1.S1_x_at--793--4011Chr12:27112566..27112590 (25 bp)
CGTCGTCGTCTCATCTTATTAATAA
LOC_Os12g43700
Os.53937.1.S1_x_at--544--4971Chr12:27112532..27112556 (25 bp)
GCATCAGATTCTTAATTATTATAAC
LOC_Os12g43700
Target Sequence 
TGGAGCACTCTCATGGCCCCTACGGGGAGAACATGATGTTCGGGACGGGGAAGCAGTGGACGTGGAAGAAGACGGTGGAC
GAGTGGAGCGACGAGAAGAAGAGCTACGACTACAAATCCAACAGCTGCAAGGCCGGCGCCATGTGCACCCACTACACCGC
CATCGTCTGGAAGAACACCACCGCCGTCGGCTGCGGCCGCGTCGTCTGCACCTCCGGCGACACCATCATGGTCTGCAGCT
ACTGGCCGCCCGGCAACTACGTCGGCGTCAAGCCCTACTAATTCATTCTTCATCATATCGATCGATCCACCACCCCTGCT
GCTGCCCTCCATCTCTCACCCATCATCGATCGATCGTCATCCATGCATCCACCATCGTCGTCGTCTCATCTTATTAATAA
TATATATATGCATCAGATTCTTAATTATTATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53937.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis