Browse Element(s) Details


Os.5400.1.S1_at

Description gb:AK058206.1
DB_XREF= gi:32968224
TID=Os.5400.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative translation initiation factor 5A (OJ1118_G09.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A08, full insert sequence.
FL= gb:AK058206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0221011/11Eukaryotic translation initiation factor 5A-1/2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02130NANA7+675800..677206flavin-containing monooxygenase family protein, putative
LOC_Os07g02140OsAffx.16039.1.S1_at11/117+683770..685521Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02150OsAffx.28229.1.S1_x_at8/117+686363..6868423'-5' exonuclease family protein
LOC_Os07g02170OsAffx.28231.1.S1_x_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02170OsAffx.28231.1.S1_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02180NANA7+691715..6932053'-5' exonuclease family protein, expressed
LOC_Os07g02190OsAffx.25643.1.S1_at1/117+697018..697329hypothetical protein
LOC_Os07g02200Os.7393.1.S1_at11/117+698177..699125Plastocyanin-like domain containing protein, expressed
LOC_Os07g02210Os.5400.1.S1_at11/117+701316..703801Eukaryotic translation initiation factor 5A-1/2, putative, expressed
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein
LOC_Os07g02240OsAffx.16042.1.S1_at11/117+716901..718126transcription factor X1, putative
LOC_Os07g02250Os.30485.1.S1_at11/117+721178..724795expressed protein
LOC_Os07g02260OsAffx.8843.1.S1_at11/117+724976..725668expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5400.1.S1_at--393--2571Chr07:702847..702960 (25 bp)
AACTGTGACGTTCCTCATGTTGATC
LOC_Os07g02210
Os.5400.1.S1_at--529--6651Chr07:702954..702978 (25 bp)
GTTGATCGTACTGATTACCAGCTGA
LOC_Os07g02210
Os.5400.1.S1_at--936--1671Chr07:703099..703123 (25 bp)
AGCCTTTTGACTGAGAGCGGCAACA
LOC_Os07g02210
Os.5400.1.S1_at--577--2911Chr07:703126..703150 (25 bp)
AAGGATGACTTGAGGCTTCCCACTG
LOC_Os07g02210
Os.5400.1.S1_at--187--3651Chr07:703141..703165 (25 bp)
CTTCCCACTGATGATACTCTGACTA
LOC_Os07g02210
Os.5400.1.S1_at--364--8851Chr07:703438..703462 (25 bp)
TGATCTTGACTGTGATGTCCGCCAT
LOC_Os07g02210
Os.5400.1.S1_at--864--5491Chr07:703470..703494 (25 bp)
GAACAGATCTGTGCCGTCAAGGAGA
LOC_Os07g02210
Os.5400.1.S1_at--338--2391Chr07:703505..703529 (25 bp)
AAACTAAGCGGCTTTGCTCGATTGC
LOC_Os07g02210
Os.5400.1.S1_at--982--3811Chr07:703530..703554 (25 bp)
CTGCCTGCCTACGATACTTTGCTAT
LOC_Os07g02210
Os.5400.1.S1_at--238--6911Chr07:703698..703722 (25 bp)
GTATCCTTTGAATCGAGTGGCAGCT
LOC_Os07g02210
Os.5400.1.S1_at--337--7491Chr07:703741..703765 (25 bp)
GTGGGAAATCCATTCTGCTATGAGA
LOC_Os07g02210
Target Sequence 
AACTGTGACGTTCCTCATGTTGATCGTACTGATTACCAGCTGATTGACATTTCGGAAGATGGATTTGTGAGCCTTTTGAC
TGAGAGCGGCAACACTAAGGATGACTTGAGGCTTCCCACTGATGATACTCTGACTAACCAGATCAAGAACGGGTTTGGTG
AAGAAGGCAAGGATATGATCTTGACTGTGATGTCCGCCATGGGTGAAGAACAGATCTGTGCCGTCAAGGAGATTGGGGCC
AAAAACTAAGCGGCTTTGCTCGATTGCCTGCCTGCCTACGATACTTTGCTATCTTAGTGTTGAGAGCTGAGACACATAAA
TAGAAGTTTTTTTTATGCTACCTGTGGATGAAATGACGATCAAAACCTTCATCGATTTTATGTTACACTGGATGGTCATG
AGATACTTGTTAATGCTTTTCATTATCAGTTTCAAGTATCCTTTGAATCGAGTGGCAGCTGTAATTCGTATAGTAAAAGT
GGGAAATCCATTCTGCTATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis