Browse Element(s) Details


Os.54000.1.S1_at

Description gb:AK101215.1
DB_XREF= gi:32986424
TID=Os.54000.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-122-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031B16, full insert sequence.
FL= gb:AK101215.1 gb:AK107103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3825011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38170Os.26840.1.S1_at11/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.2.S1_x_at2/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.1.S1_a_at1/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed
LOC_Os11g38190OsAffx.31360.1.S1_at11/1111+22141243..22142659hypothetical protein
LOC_Os11g38200OsAffx.31361.1.S1_at11/1111+22144469..22145890F-box domain containing protein
LOC_Os11g38210OsAffx.7335.1.S1_at11/1111+22148474..22148902expressed protein
LOC_Os11g38210Os.23172.1.S1_x_at1/1111+22148474..22148902expressed protein
LOC_Os11g38220OsAffx.19229.1.S1_s_at1/1111+22150250..22150678expressed protein
LOC_Os11g38220OsAffx.7335.1.S1_at1/1111+22150250..22150678expressed protein
LOC_Os11g38230OsAffx.19228.1.S1_at11/1111+22152816..22154225F-box domain containing protein
LOC_Os11g38240OsAffx.19229.1.S1_s_at11/1111+22155870..22156521expressed protein
LOC_Os11g38250Os.54000.1.S1_at11/1111+22157130..22158828expressed protein
LOC_Os11g38260Os.27862.1.S1_at10/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38260Os.12799.1.S1_s_at2/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38270OsAffx.31362.1.S1_at11/1111+22162134..22163672hypothetical protein
LOC_Os11g38280NANA11+22164708..22164968hypothetical protein
LOC_Os11g38290OsAffx.31422.1.S1_at10/1111+22169887..22171204hypothetical protein
LOC_Os11g38300OsAffx.31479.1.S1_x_at11/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38300OsAffx.31479.4.S1_x_at9/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38310OsAffx.31479.5.S1_x_at11/1111+22179008..22183269hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54000.1.S1_at--776--6911Chr11:22157665..22157689 (25 bp)
GTATGCTGAACATGTCTGGCTAGAC
LOC_Os11g38250
Os.54000.1.S1_at--582--9391Chr11:22157480..22157504 (25 bp)
TCGTTAGCGGCTATTGGCAACATGC
LOC_Os11g38250
Os.54000.1.S1_at--730--8231Chr11:22157465..22157489 (25 bp)
GGCAACATGCTACTGGTGTCCATCA
LOC_Os11g38250
Os.54000.1.S1_at--909--151Chr11:22157392..22157416 (25 bp)
ATTATCTGTTTCTGCACCTGAGGAC
LOC_Os11g38250
Os.54000.1.S1_at--17--8871Chr11:22157374..22157398 (25 bp)
TGAGGACAACTCTGGCCCGTTCACG
LOC_Os11g38250
Os.54000.1.S1_at--748--6751Chr11:22157356..22157380 (25 bp)
GTTCACGAACAACCTCTTGTGGTTA
LOC_Os11g38250
Os.54000.1.S1_at--1023--671Chr11:22157273..22157297 (25 bp)
ATGACAGTGCTAATGTGGCCTCCAT
LOC_Os11g38250
Os.54000.1.S1_at--1080--2351Chr11:22157236..22157260 (25 bp)
AAACCAGTGATGGTGTTCTTTTCCT
LOC_Os11g38250
Os.54000.1.S1_at--309--6731Chr11:22157222..22157246 (25 bp)
GTTCTTTTCCTCTTCATGACCGAAA
LOC_Os11g38250
Os.54000.1.S1_at--72--7032Chr11:22157163..22157187 (25 bp)
GTACATGTCACAGATCTACTTTGAT
LOC_Os11g38250
Os.54000.1.S1_at--1137--10171Chr11:22157133..22157157 (25 bp)
TATACTTATCATGCCCTGTTTGACA
LOC_Os11g38250
Target Sequence 
GTATGCTGAACATGTCTGGCTAGACACTGAGAAAATTGGGATATATGCTCTGGACTTCAGCACAAACCCTCACAGCTTGA
CTGAGATAAACAACTTGGATGGTGATTGTCTCTTCATTAGTTTGCGCAGCAGCAAGTCCTTTCCTGCTTGTCAGTATGAT
GGAGCCAAAGGTGATTTTGTCTACTTCGTTAGCGGCTATTGGCAACATGCTACTGGTGTCCATCATTCTTTTGATGTACT
TGTGTACAATGTGAGAGATGCTACAACGACACGATTATCTGTTTCTGCACCTGAGGACAACTCTGGCCCGTTCACGAACA
ACCTCTTGTGGTTATTTCCTCCGAGATGAATGCTACTGAGAAGATCCAATCAGATCATATCATATCAATAGTATGACAGT
GCTAATGTGGCCTCCATTGACCGAAATGTAAACCAGTGATGGTGTTCTTTTCCTCTTCATGACCGAAATATTGTGTTGTT
GGTTGTTCTCAAATAACCCTGAGTACATGTCACAGATCTACTTTGATTGCAATATACTTATCATGCCCTGTTTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis