Browse Element(s) Details


Os.54005.1.S1_at

Description gb:AK101229.1
DB_XREF= gi:32986438
TID=Os.54005.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031H19, full insert sequence.
FL= gb:AK101229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3590011/11BES1/BZR1 homolog protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35850Os.52163.1.S1_at11/116+20914617..20917497Protein kinase domain containing protein, expressed
LOC_Os06g35860OsAffx.27956.1.S1_at11/116+20923539..20926121hypothetical protein
LOC_Os06g35860Os.56283.1.S1_at1/116+20923539..20926121hypothetical protein
LOC_Os06g35870OsAffx.15760.1.S1_at11/116+20928243..20930165D-mannose binding lectin family protein
LOC_Os06g35880OsAffx.15761.1.S1_at10/116+20930635..20933472hypothetical protein
LOC_Os06g35890NANA6+20938338..20938692hypothetical protein
LOC_Os06g35900Os.54005.1.S1_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35900OsAffx.24237.1.S1_x_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35910Os.18861.1.S1_a_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35910OsAffx.27957.1.S1_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35920OsAffx.15763.1.S1_at10/116+20952443..20953274hypothetical protein
LOC_Os06g35930OsAffx.15764.1.S1_at9/116+20959709..20960822MIP family channel proteins containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54005.1.S1_at--1138--531Chr06:20942783..20942807 (25 bp)
ATCCCTCCTGATCGTGCTACTAGAG
LOC_Os06g35900
Os.54005.1.S1_at--818--6391Chr06:20942792..20942816 (25 bp)
GATCGTGCTACTAGAGCGTCACTTC
LOC_Os06g35900
Os.54005.1.S1_at--1110--4631Chr06:20942807..20942831 (25 bp)
GCGTCACTTCTTCGGTTGGGTTTAT
LOC_Os06g35900
Os.54005.1.S1_at--450--10211Chr06:20942836..20942860 (25 bp)
TATTTATTTGTATGCTACTCATCTG
LOC_Os06g35900
Os.54005.1.S1_at--423--4851Chr06:20942849..20942873 (25 bp)
GCTACTCATCTGTTTTTTAAGTTCA
LOC_Os06g35900
Os.54005.1.S1_at--1133--3131Chr06:20942897..20942921 (25 bp)
AATTCAGAGATCCTACCATGGTCCT
LOC_Os06g35900
Os.54005.1.S1_at--142--9991Chr06:20942910..20942934 (25 bp)
TACCATGGTCCTCTGTAGATGATAT
LOC_Os06g35900
Os.54005.1.S1_at--1153--711Chr06:20942928..20942952 (25 bp)
ATGATATATCCATCCTCTTTCAGGG
LOC_Os06g35900
Os.54005.1.S1_at--722--10131Chr06:20942934..20942958 (25 bp)
TATCCATCCTCTTTCAGGGATCTGA
LOC_Os06g35900
Os.54005.1.S1_at--563--3471Chr06:20942948..20942972 (25 bp)
CAGGGATCTGAACTTGTGTTAGCTT
LOC_Os06g35900
Os.54005.1.S1_at--236--5491Chr06:20942957..20942981 (25 bp)
GAACTTGTGTTAGCTTATGCAACTT
LOC_Os06g35900
Target Sequence 
ATCCCTCCTGATCGTGCTACTAGAGCGTCACTTCTTCGGTTGGGTTTATTTCATATTTATTTGTATGCTACTCATCTGTT
TTTTAAGTTCAGTGTTTGTAGAAAGAGAGAAGGGAATTCAGAGATCCTACCATGGTCCTCTGTAGATGATATATCCATCC
TCTTTCAGGGATCTGAACTTGTGTTAGCTTATGCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis