Browse Element(s) Details


Os.54019.1.S1_at

Description gb:AK101313.1
DB_XREF= gi:32986522
TID=Os.54019.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034A12, full insert sequence.
FL= gb:AK101313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1569011/11Beta-expansin 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15630Os.11249.1.S1_at11/115+8825892..8827971plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os05g15640NANA5+8830657..8831369retrotransposon, putative, centromere-specific
LOC_Os05g15650OsAffx.4349.1.S1_x_at10/115+8831782..8832888hypothetical protein
LOC_Os05g15650OsAffx.4349.1.S1_at10/115+8831782..8832888hypothetical protein
LOC_Os05g15660OsAffx.25367.1.S1_at1/115+8836688..8839197retrotransposon, putative, centromere-specific
LOC_Os05g15670OsAffx.29943.1.S1_at11/115+8844175..8844757hypothetical protein
LOC_Os05g15670OsAffx.29943.2.S1_x_at1/115+8844175..8844757hypothetical protein
LOC_Os05g15680OsAffx.14711.1.S1_at7/115+8848400..8849353hypothetical protein
LOC_Os05g15690Os.54019.1.S1_at11/115+8849664..8851242Beta-expansin 2 precursor, putative, expressed
LOC_Os05g15700OsAffx.26910.1.S1_at11/115+8853370..8853961hypothetical protein
LOC_Os05g15710OsAffx.14712.1.S1_at11/115+8856774..8857482hypothetical protein
LOC_Os05g15720OsAffx.4350.1.S1_at11/115+8858672..8865870Protein kinase domain containing protein, expressed
LOC_Os05g15730OsAffx.26912.1.S1_at10/115+8866184..8868699hypothetical protein
LOC_Os05g15730OsAffx.2711.1.S1_x_at1/115+8866184..8868699hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_x_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15750OsAffx.18924.2.S1_x_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15750OsAffx.19421.2.S1_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54019.1.S1_at--316--9291Chr05:8850211..8850235 (25 bp)
TCCGGGATGGACCTCATGCAGACAG
LOC_Os05g15690
Os.54019.1.S1_at--37--2191Chr05:8850018..8850042 (25 bp)
ACACATCGACGGTGAACTACTAATG
LOC_Os05g15690
Os.54019.1.S1_at--656--5471Chr05:8850005..8850029 (25 bp)
GAACTACTAATGATCGCAAGCACTG
LOC_Os05g15690
Os.54019.1.S1_at--185--5091Chr05:8849981..8850005 (25 bp)
GCACCACAACTTGCATAGCTGCATG
LOC_Os05g15690
Os.54019.1.S1_at--23--5091Chr05:8849949..8849973 (25 bp)
GCACCATGCATGCAGCTTTGCAATA
LOC_Os05g15690
Os.54019.1.S1_at--910--311Chr05:8849927..8849951 (25 bp)
ATACATATATGTCTGCAGGCAAAAG
LOC_Os05g15690
Os.54019.1.S1_at--408--6611Chr05:8849884..8849908 (25 bp)
GATTGGTGCAACAACGATGTGTACT
LOC_Os05g15690
Os.54019.1.S1_at--451--8011Chr05:8849818..8849842 (25 bp)
GGAGGCGCAGATGATTTACCAGTTC
LOC_Os05g15690
Os.54019.1.S1_at--1099--4131Chr05:8849784..8849808 (25 bp)
CGCTGCAGTTGTCGTACGTGTCAAT
LOC_Os05g15690
Os.54019.1.S1_at--1029--8271Chr05:8849709..8849733 (25 bp)
GGCATAATAGCCGACCAGTGCTTAT
LOC_Os05g15690
Os.54019.1.S1_at--516--5852Chr04:27428359..27428381 (23 bp)
GACCAGTGCTTATAAACGTGCTACT
NONE
Target Sequence 
TCCGGGATGGACCTCATGCAGACAGGGGCCGGCGCCGCCTGGACGCCGATGCAGCAGTCGTGGGGCGCCGTCTGGAAGCT
GAGCGCCGGCGCGGCGCTGCAGGCGCCGCTCTCCATCCGCCTCACGTCCAGCTCCGGCAAGACGCTCGTCGCCAGCAACG
TCATCCCTTCCGGCTGGAAGCCCGGCGCGTCGTACACATCGACGGTGAACTACTAATGATCGCAAGCACTGCACCACAAC
TTGCATAGCTGCATGTGCATGTGCACCATGCATGCAGCTTTGCAATACATATATGTCTGCAGGCAAAAGGCATATATATA
TTGGATCGATTGGTGCAACAACGATGTGTACTTGTAAGTGTGAAATTAATAACGGCGAGATACGTACAGAGGAGGAGGCG
CAGATGATTTACCAGTTCTCCCCTCATCGCTGCAGTTGTCGTACGTGTCAATGATTATCGTTATACGTGTTAATTACTGT
GTGTGTGATCAGTGTTTGTAATGGCATAATAGCCGACCAGTGCTTATAAACGTGCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis