Browse Element(s) Details


Os.54029.1.S1_at

Description gb:AK101415.1
DB_XREF= gi:32986624
TID=Os.54029.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033077I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037L18, full insert sequence.
FL= gb:AK101980.1 gb:AK101415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1433011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14280OsAffx.2494.1.S1_at1/1112+8131146..8133967hypothetical protein
LOC_Os12g14290NANA12+8134921..8141106retrotransposon protein, putative, unclassified
LOC_Os12g14310OsAffx.31739.1.S1_at11/1112+8151390..8151750expressed protein
LOC_Os12g14320OsAffx.7591.1.S1_at11/1112+8152860..8153258hypothetical protein
LOC_Os12g14330Os.54029.1.S1_at11/1112+8158878..8162674NB-ARC domain containing protein, expressed
LOC_Os12g14340OsAffx.7592.1.S1_at9/1112+8166887..8168120hypothetical protein
LOC_Os12g14340Os.8747.3.S1_x_at1/1112+8166887..8168120hypothetical protein
LOC_Os12g14350OsAffx.19664.1.S1_at11/1112+8172216..8172918GRF zinc finger family protein
LOC_Os12g14360Os.57189.1.S1_at1/1112+8173331..8179284transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54029.1.S1_at--580--8251Chr12:8161988..8162012 (25 bp)
GGCAGAGTGGTTTCCTAAGCTTCAT
LOC_Os12g14330
Os.54029.1.S1_at--264--4911Chr12:8162006..8162030 (25 bp)
GCTTCATACACTTACTTTGGCTGAG
LOC_Os12g14330
Os.54029.1.S1_at--518--3691Chr12:8162081..8162105 (25 bp)
CTATAACTTTGCTCTCATCTGCTTG
LOC_Os12g14330
Os.54029.1.S1_at--1062--71Chr12:8162138..8162162 (25 bp)
ATTCCTTGGGTCTGTTGAAGAGCTC
LOC_Os12g14330
Os.54029.1.S1_at--267--1371Chr12:8162156..8162180 (25 bp)
AGAGCTCAGTTTGGTGGGCATGCAC
LOC_Os12g14330
Os.54029.1.S1_at--458--4071Chr12:8162277..8162301 (25 bp)
CGACTTTCTCCACTTTATTTCGAAG
LOC_Os12g14330
Os.54029.1.S1_at--757--2791Chr12:8162428..8162452 (25 bp)
AAGATGGATTACCTGCACTCCGAGC
LOC_Os12g14330
Os.54029.1.S1_at--316--6431Chr12:8162483..8162507 (25 bp)
GATCTTTCTACTATGTTCTCTCTAT
LOC_Os12g14330
Os.54029.1.S1_at--307--6871Chr12:8162530..8162554 (25 bp)
GTATTTTGCCACTCTTACATTAGTA
LOC_Os12g14330
Os.54029.1.S1_at--557--2071Chr12:8162546..8162570 (25 bp)
ACATTAGTATCCTTTTGCCATCTCC
LOC_Os12g14330
Os.54029.1.S1_at--736--10691Chr12:8162560..8162584 (25 bp)
TTGCCATCTCCATTCGGTTGATGAT
LOC_Os12g14330
Target Sequence 
GGCAGAGTGGTTTCCTAAGCTTCATACACTTACTTTGGCTGAGCTGCAAAATGTCAGTTCAATAGTGATTGAAAAGCATA
GCATGCCAAATCTCTATAACTTTGCTCTCATCTGCTTGACAAATTTAGAGGATTTGCCTGAGGGCATGGAATTCCTTGGG
TCTGTTGAAGAGCTCAGTTTGGTGGGCATGCACCAAAAATTCATGGAACATGTACAAGGTTCCTCAAATGTAAAAGTCAA
ACACATTCCTGTAGTTGACTACTTTGATCAAACCAAAGGGAGGTGGGATCGACTTTCTCCACTTTATTTCGAAGACGAAG
GCACTAAGAATTGAAATTAAACACAAGCAAAGAAAAGATGGATTACCTGCACTCCGAGCTTATCCTATTCCCCACTCATT
TCTACTAGAGATCTTTCTACTATGTTCTCTCTATTGGCATCCAAAAATATTTCTATGTATTTTGCCACTCTTACATTAGT
ATCCTTTTGCCATCTCCATTCGGTTGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis