Browse Element(s) Details


OsAffx.7592.1.S1_at

Description tigr:9640.m01389
TID=OsAffx.7592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g143409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14310OsAffx.31739.1.S1_at11/1112+8151390..8151750expressed protein
LOC_Os12g14320OsAffx.7591.1.S1_at11/1112+8152860..8153258hypothetical protein
LOC_Os12g14330Os.54029.1.S1_at11/1112+8158878..8162674NB-ARC domain containing protein, expressed
LOC_Os12g14340OsAffx.7592.1.S1_at9/1112+8166887..8168120hypothetical protein
LOC_Os12g14340Os.8747.3.S1_x_at1/1112+8166887..8168120hypothetical protein
LOC_Os12g14350OsAffx.19664.1.S1_at11/1112+8172216..8172918GRF zinc finger family protein
LOC_Os12g14360Os.57189.1.S1_at1/1112+8173331..8179284transposon protein, putative, Mutator sub-class
LOC_Os12g14374OsAffx.7593.1.S1_at11/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374Os.38751.1.A1_at7/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.22699.1.S1_x_at5/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.8338.1.S1_x_at3/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.18275.1.S1_x_at2/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.13786.1.S1_x_at2/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.10020.1.S1_x_at1/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.30486.1.S1_at1/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.8469.1.S1_x_at1/1112+8191468..8202380retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7592.1.S1_at--984--8791Chr12:8166952..8166976 (25 bp)
TGTTCTTTGGCTTTTCATTGATTCA
LOC_Os12g14340
OsAffx.7592.1.S1_at--979--10531Chr12:8166965..8166989 (25 bp)
TTCATTGATTCAAAGACGGTGACAA
LOC_Os12g14340
OsAffx.7592.1.S1_at--375--7351Chr12:8166995..8167019 (25 bp)
GTGAAGGAACTTCACAGACTGTTCT
LOC_Os12g14340
OsAffx.7592.1.S1_at--28--3511NONE
CATGGAGCTGTGTTGAAGGCGAACT
NONE
OsAffx.7592.1.S1_at--81--8791NONE
TGTTGAAGGCGAACTGGACGATGAT
NONE
OsAffx.7592.1.S1_at--767--5771Chr12:8167445..8167935 (25 bp)
GACGATGATCGCAGAGGTTGCTTCG
LOC_Os12g14340
OsAffx.7592.1.S1_at--1021--5031Chr12:8167921..8167945 (25 bp)
GCAGAGGTTGCTTCGATCCACGCGA
LOC_Os12g14340
OsAffx.7592.1.S1_at--433--9391Chr12:8167933..8167957 (25 bp)
TCGATCCACGCGACGGGCAGCGAGA
LOC_Os12g14340
OsAffx.7592.1.S1_at--421--5071Chr12:8167949..8167973 (25 bp)
GCAGCGAGACAAGCGCCGCGTGGTT
LOC_Os12g14340
OsAffx.7592.1.S1_at--538--991Chr12:8167983..8168007 (25 bp)
AGGATGGCGCGGGACGACCATGCGA
LOC_Os12g14340
OsAffx.7592.1.S1_at--625--6111Chr12:8168030..8168054 (25 bp)
GAGTGCCGCGACCTGCAGCGATGAA
LOC_Os12g14340
Target Sequence 
TGTTCTTTGGCTTTTCATTGATTCAAAGACGGTGACAATGATGGTGAAGGAACTTCACAGACTGTTCTTCAGTCCTTCAC
TGATTGATGAGGGTGGTGGTGCATGGAGCTGTGTTGAAGGCGAACTGGACGATGATCGCAGAGGTTGCTTCGATCCACGC
GACGGGCAGCGAGACAAGCGCCGCGTGGTTGGGGCCGAGAGGATGGCGCGGGACGACCATGCGACTGGTGGAGGAGCAGC
AGGGACGAGTGCCGCGACCTGCAGCGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis