Browse Element(s) Details


OsAffx.7591.1.S1_at

Description tigr:9640.m01387
TID=OsAffx.7591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1432011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14280OsAffx.2494.1.S1_at1/1112+8131146..8133967hypothetical protein
LOC_Os12g14290NANA12+8134921..8141106retrotransposon protein, putative, unclassified
LOC_Os12g14310OsAffx.31739.1.S1_at11/1112+8151390..8151750expressed protein
LOC_Os12g14320OsAffx.7591.1.S1_at11/1112+8152860..8153258hypothetical protein
LOC_Os12g14330Os.54029.1.S1_at11/1112+8158878..8162674NB-ARC domain containing protein, expressed
LOC_Os12g14340OsAffx.7592.1.S1_at9/1112+8166887..8168120hypothetical protein
LOC_Os12g14340Os.8747.3.S1_x_at1/1112+8166887..8168120hypothetical protein
LOC_Os12g14350OsAffx.19664.1.S1_at11/1112+8172216..8172918GRF zinc finger family protein
LOC_Os12g14360Os.57189.1.S1_at1/1112+8173331..8179284transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7591.1.S1_at--612--5871Chr12:8153194..8153218 (25 bp)
GAGCCCCGCGGAAACGCAGAGCCGA
LOC_Os12g14320
OsAffx.7591.1.S1_at--187--1851Chr12:8153181..8153205 (25 bp)
ACGCAGAGCCGAGGGTCGTGACCTT
LOC_Os12g14320
OsAffx.7591.1.S1_at--1008--9411Chr12:8153166..8153190 (25 bp)
TCGTGACCTTCTTGGCAGTGTGGAG
LOC_Os12g14320
OsAffx.7591.1.S1_at--382--7991Chr12:8153091..8153115 (25 bp)
GGATGATGGGCTCCCTTTTCGGTCA
LOC_Os12g14320
OsAffx.7591.1.S1_at--474--10391Chr12:8153076..8153100 (25 bp)
TTTTCGGTCATCGAGACGGGCTCCA
LOC_Os12g14320
OsAffx.7591.1.S1_at--207--511Chr12:8153067..8153091 (25 bp)
ATCGAGACGGGCTCCATTTCCTCAT
LOC_Os12g14320
OsAffx.7591.1.S1_at--103--10551Chr12:8152999..8153023 (25 bp)
TTCCTAGGCGGCACAGGCAATGGCA
LOC_Os12g14320
OsAffx.7591.1.S1_at--1124--1691Chr12:8152929..8152953 (25 bp)
ACCAACCCTCGAACAGGCTGAAGAA
LOC_Os12g14320
OsAffx.7591.1.S1_at--508--2491Chr12:8152918..8152942 (25 bp)
AACAGGCTGAAGAACGAGTGACCAT
LOC_Os12g14320
OsAffx.7591.1.S1_at--267--6111Chr12:8152903..8152927 (25 bp)
GAGTGACCATCTTTGGTTCCGCATT
LOC_Os12g14320
OsAffx.7591.1.S1_at--134--10251Chr12:8152892..8152916 (25 bp)
TTTGGTTCCGCATTCTTCGTGGGAC
LOC_Os12g14320
Target Sequence 
GAGCCCCGCGGAAACGCAGAGCCGAGGGTCGTGACCTTCTTGGCAGTGTGGAGAAGGGGATGACAGCAAGCTCCTCGGTG
CGGCGCGGAGCTGGGAAGACGGGGGATGATGGGCTCCCTTTTCGGTCATCGAGACGGGCTCCATTTCCTCATCACCCTTC
TCCCTTTCCCTACCCAGGCGGTTTCTCCCTTTCCCTTCCTAGGCGGCACAGGCAATGGCAAGCCATGCCCTCCACAACGC
CTCTCCTGCCTTCTCTCCCCATGCCACCAACCCTCGAACAGGCTGAAGAACGAGTGACCATCTTTGGTTCCGCATTCTTC
GTGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis