Browse Element(s) Details


OsAffx.31739.1.S1_at

Description tigr:9640.m01386
TID=OsAffx.31739.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1431011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14280OsAffx.2494.1.S1_at1/1112+8131146..8133967hypothetical protein
LOC_Os12g14290NANA12+8134921..8141106retrotransposon protein, putative, unclassified
LOC_Os12g14310OsAffx.31739.1.S1_at11/1112+8151390..8151750expressed protein
LOC_Os12g14320OsAffx.7591.1.S1_at11/1112+8152860..8153258hypothetical protein
LOC_Os12g14330Os.54029.1.S1_at11/1112+8158878..8162674NB-ARC domain containing protein, expressed
LOC_Os12g14340OsAffx.7592.1.S1_at9/1112+8166887..8168120hypothetical protein
LOC_Os12g14340Os.8747.3.S1_x_at1/1112+8166887..8168120hypothetical protein
LOC_Os12g14350OsAffx.19664.1.S1_at11/1112+8172216..8172918GRF zinc finger family protein
LOC_Os12g14360Os.57189.1.S1_at1/1112+8173331..8179284transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31739.1.S1_at--445--9991Chr12:8151528..8151552 (25 bp)
TAGCCCTTCACGACTCCAGGAGATA
LOC_Os12g14310
OsAffx.31739.1.S1_at--838--4051Chr12:8151538..8151562 (25 bp)
CGACTCCAGGAGATATTTCTTTTTG
LOC_Os12g14310
OsAffx.31739.1.S1_at--577--10191Chr12:8151551..8151575 (25 bp)
TATTTCTTTTTGGTAGTTGGGATCA
LOC_Os12g14310
OsAffx.31739.1.S1_at--1112--6251Chr12:8151566..8151590 (25 bp)
GTTGGGATCAACTCGGGATTGTAAT
LOC_Os12g14310
OsAffx.31739.1.S1_at--720--7951Chr12:8151570..8151594 (25 bp)
GGATCAACTCGGGATTGTAATTCTA
LOC_Os12g14310
OsAffx.31739.1.S1_at--140--2551Chr12:8151575..8151599 (25 bp)
AACTCGGGATTGTAATTCTAGAAAT
LOC_Os12g14310
OsAffx.31739.1.S1_at--806--10791Chr12:8151584..8151608 (25 bp)
TTGTAATTCTAGAAATGACCCATCT
LOC_Os12g14310
OsAffx.31739.1.S1_at--1115--2991Chr12:8151597..8151621 (25 bp)
AATGACCCATCTAAACAACGTTCTT
LOC_Os12g14310
OsAffx.31739.1.S1_at--518--1811Chr12:8151601..8151625 (25 bp)
ACCCATCTAAACAACGTTCTTCAGC
LOC_Os12g14310
OsAffx.31739.1.S1_at--143--451Chr12:8151605..8151629 (25 bp)
ATCTAAACAACGTTCTTCAGCCCAA
LOC_Os12g14310
OsAffx.31739.1.S1_at--839--2391Chr12:8151609..8151633 (25 bp)
AAACAACGTTCTTCAGCCCAACTTG
LOC_Os12g14310
Target Sequence 
TAGCCCTTCACGACTCCAGGAGATATTTCTTTTTGGTAGTTGGGATCAACTCGGGATTGTAATTCTAGAAATGACCCATC
TAAACAACGTTCTTCAGCCCAACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis