Browse Element(s) Details


OsAffx.7593.1.S1_at

Description tigr:9640.m01392
TID=OsAffx.7593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1437411/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14340OsAffx.7592.1.S1_at9/1112+8166887..8168120hypothetical protein
LOC_Os12g14340Os.8747.3.S1_x_at1/1112+8166887..8168120hypothetical protein
LOC_Os12g14350OsAffx.19664.1.S1_at11/1112+8172216..8172918GRF zinc finger family protein
LOC_Os12g14360Os.57189.1.S1_at1/1112+8173331..8179284transposon protein, putative, Mutator sub-class
LOC_Os12g14374OsAffx.7593.1.S1_at11/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374Os.38751.1.A1_at7/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.22699.1.S1_x_at5/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.8338.1.S1_x_at3/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.18275.1.S1_x_at2/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.13786.1.S1_x_at2/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.10020.1.S1_x_at1/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.30486.1.S1_at1/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14374OsAffx.8469.1.S1_x_at1/1112+8191468..8202380retrotransposon protein, putative, unclassified
LOC_Os12g14390NANA12+8203759..8205880hypothetical protein
LOC_Os12g14400NANA12+8208681..8211844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14410OsAffx.8469.1.S1_x_at2/1112+8212460..8213221retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14420Os.10731.1.A1_a_at7/1112+8214398..8218822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14420Os.38764.1.S1_x_at7/1112+8214398..8218822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14420Os.45173.1.S1_x_at2/1112+8214398..8218822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14430OsAffx.31869.5.S1_x_at2/1112+8226238..8227338retrotransposon protein, putative, unclassified
LOC_Os12g14430OsAffx.31869.1.S1_at1/1112+8226238..8227338retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7593.1.S1_at--562--2172Chr12:8193185..8193209 (25 bp)
ACACTCTTTTGGCATGCCCGATGGG
LOC_Os12g14374
OsAffx.7593.1.S1_at--174--591Chr12:8193198..8193222 (25 bp)
ATGCCCGATGGGACCGATAAGAAGT
LOC_Os12g14374
OsAffx.7593.1.S1_at--230--2211Chr12:8193226..8193250 (25 bp)
ACAAGCAATTCCTTCTCATGGCCGA
LOC_Os12g14374
OsAffx.7593.1.S1_at--928--5951Chr12:8193249..8193273 (25 bp)
GAGAAACCACCGCTATCACCATCTT
LOC_Os12g14374
OsAffx.7593.1.S1_at--1013--10151Chr12:8193262..8193286 (25 bp)
TATCACCATCTTCGGCTAGTTCAGG
LOC_Os12g14374
OsAffx.7593.1.S1_at--824--431Chr12:8193269..8193293 (25 bp)
ATCTTCGGCTAGTTCAGGCACTGTC
LOC_Os12g14374
OsAffx.7593.1.S1_at--77--5191Chr12:8193333..8193357 (25 bp)
GAAGGGAACGTCGTACCCATCGATC
LOC_Os12g14374
OsAffx.7593.1.S1_at--1016--2671Chr12:8193394..8193418 (25 bp)
AAGCGATGATGCAGGCAGCACGTGA
LOC_Os12g14374
OsAffx.7593.1.S1_at--290--931Chr12:8193406..8193430 (25 bp)
AGGCAGCACGTGATCAATTCTTGAA
LOC_Os12g14374
OsAffx.7593.1.S1_at--367--2291Chr12:8193479..8193503 (25 bp)
AAAGGTGGTTCTTGACGATCCCGAG
LOC_Os12g14374
OsAffx.7593.1.S1_at--568--371Chr12:8193693..8193717 (25 bp)
ATCAAGACGACAATGCAACGCAGTT
LOC_Os12g14374
Target Sequence 
ACACTCTTTTGGCATGCCCGATGGGACCGATAAGAAGTCAGACAAGCAATTCCTTCTCATGGCCGAGAAACCACCGCTAT
CACCATCTTCGGCTAGTTCAGGCACTGTCAAGGAGAAGATCCAGAAGTTAGGTTTGACCGACGTCAATGAAGGGAACGTC
GTACCCATCGATCCAGAAAAATTCACACCTGATCAAAAGAAAGATTTTGAAGCGATGATGCAGGCAGCACGTGATCAATT
CTTGAACTCATTCATGCAGACTCGCAAGGGGACACTTGTTCAGAAGTATAAAATAAAGGTGGTTCTTGACGATCCCGAGA
CTGGTTCCTCTAAGGATGGAGAAGGAAAACAAACTCAAGATGGCTCGGCTCAACTGAATGACAAAGGTGCTACAGATGGT
TTTCCACCAAATCAAGGTGACAACTCTCAAGGGGTACATGGGGTTCAAGGTGATGGTTTTAGGGGGTTCAAGGTGATGGT
TCACAGGGAGTTCAAGGTGGAGGTGTTAATCAAGACGACAATGCAACGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis