Browse Element(s) Details


Os.54040.1.S1_at

Description gb:AK101460.1
DB_XREF= gi:32986669
TID=Os.54040.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040E12, full insert sequence.
FL= gb:AK101460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0447011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04430OsAffx.16825.1.S1_s_at10/118+2164054..2165002expressed protein
LOC_Os08g04440Os.9748.1.S1_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04440Os.9748.2.S1_x_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed
LOC_Os08g04470OsAffx.5699.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04470Os.54040.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04480OsAffx.5700.1.S1_x_at11/118+2197103..2197961hypothetical protein
LOC_Os08g04490OsAffx.5701.1.S1_at11/118+2198769..2203345hypothetical protein
LOC_Os08g04500Os.57569.2.A1_s_at11/118+2203682..2207548Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g04510OsAffx.22848.3.S1_x_at3/118+2212585..2218544retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54040.1.S1_at--989--6311Chr08:2189459..2189483 (25 bp)
GATGAATTTCATCCAAACTCCAAAC
LOC_Os08g04470
Os.54040.1.S1_at--2--7311Chr08:2189425..2189449 (25 bp)
GTGCGAATTTTGATTCGGCGCCTCT
LOC_Os08g04470
Os.54040.1.S1_at--119--3931Chr08:2189410..2189434 (25 bp)
CGGCGCCTCTTCGAATCGGTGTTGG
LOC_Os08g04470
Os.54040.1.S1_at--506--10771Chr08:2189319..2189343 (25 bp)
TTGGTTGGGTTCATTTCCCTTCTCT
LOC_Os08g04470
Os.54040.1.S1_at--1160--191Chr08:2189307..2189331 (25 bp)
ATTTCCCTTCTCTTTTCATGTGGTA
LOC_Os08g04470
Os.54040.1.S1_at--768--9551Chr08:2189297..2189321 (25 bp)
TCTTTTCATGTGGTAGCAGCGTCGA
LOC_Os08g04470
Os.54040.1.S1_at--1106--4871Chr08:2189208..2189232 (25 bp)
GCTTAGAAAAACATGGTCCTCTCAT
LOC_Os08g04470
Os.54040.1.S1_at--151--431Chr08:2189185..2189209 (25 bp)
ATCATTTCACCCAGACCTTCTGTGG
LOC_Os08g04470
Os.54040.1.S1_at--1050--1731Chr08:2189171..2189195 (25 bp)
ACCTTCTGTGGTGTTCTGTTCTGGA
LOC_Os08g04470
Os.54040.1.S1_at--149--6731Chr08:2189159..2189183 (25 bp)
GTTCTGTTCTGGATTGAATTCTGAA
LOC_Os08g04470
Os.54040.1.S1_at--856--391Chr08:2189127..2189151 (25 bp)
ATCATCCAATCTGAAATGTCGTATG
LOC_Os08g04470
Target Sequence 
GATGAATTTCATCCAAACTCCAAACATCAAATTTGTGCGAATTTTGATTCGGCGCCTCTTCGAATCGGTGTTGGGCTCGG
TGTACAAAGGTAGAAACAGCAAAGGTGAACCTTTTTTTGGGGTCTACTCTTCTCTTCTTTTTGGTTGGGTTCATTTCCCT
TCTCTTTTCATGTGGTAGCAGCGTCGAAAGGAAGAAGAAGAAGAAGAAAAAAAAATAAGTAGAATTTAGTTCCTTTTTTT
TTTGTTCATATGCTTAGAAAAACATGGTCCTCTCATCATTTCACCCAGACCTTCTGTGGTGTTCTGTTCTGGATTGAATT
CTGAATCCCAAAATCATCCAATCTGAAATGTCGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis