Browse Element(s) Details


Os.54088.1.S1_at

Description gb:AK101792.1
DB_XREF= gi:32987001
TID=Os.54088.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065K09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033065K09, full insert sequence.
FL= gb:AK101792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1081011/11expressed protein
LOC_Os02g226801/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10770OsAffx.29203.3.A1_x_at1/1112+5792003..5796844transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g10784Os.52003.1.S1_at11/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784Os.11494.1.S1_a_at10/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_x_at7/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_at6/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10800OsAffx.31552.2.S1_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.1.S1_x_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.3.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.22940.2.S1_at2/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10810Os.54088.1.S1_at11/1112+5816151..5818136expressed protein
LOC_Os12g10810OsAffx.19601.1.S1_at1/1112+5816151..5818136expressed protein
LOC_Os12g10820OsAffx.31689.1.S1_at11/1112+5821581..5828140expressed protein
LOC_Os12g10830OsAffx.19601.1.S1_at1/1112+5828930..5842420retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54088.1.S1_at--524--2071Chr12:5817641..5817665 (25 bp)
ACTTGTCACGTTAGTTATATGCCCC
LOC_Os12g10810
Os.54088.1.S1_at--582--6691Chr12:5817832..5817856 (25 bp)
GTTCCACTATGCCAAGTTAGCGGAT
LOC_Os12g10810
Os.54088.1.S1_at--532--5152Chr12:5817860..5817884 (25 bp)
GCAACTATAGGCGTGGAGATCTTTT
LOC_Os12g10810
Os.54088.1.S1_at--1070--8571Chr12:5817884..5817908 (25 bp)
TGGTCAATTTTACCCATTTAGCTAC
LOC_Os12g10810
Os.54088.1.S1_at--146--10311Chr12:5817917..5817941 (25 bp)
TTTCGAGCCTTCTACTTTGTTACAT
LOC_Os12g10810
Os.54088.1.S1_at--658--6772Chr12:5817935..5817959 (25 bp)
GTTACATTCTATTTATTTTCTGGCA
LOC_Os12g10810
Os.54088.1.S1_at--225--10311Chr12:5817951..5817975 (25 bp)
TTTCTGGCAAACAATCACCTACCTG
LOC_Os12g10810
Os.54088.1.S1_at--947--7271Chr12:5818015..5818039 (25 bp)
GTGCCATGTATGTATCATTTCCATA
LOC_Os12g10810
Os.54088.1.S1_at--718--2651Chr12:5818046..5818070 (25 bp)
AACCAAGGCTTCATGTGTCTGTGTC
LOC_Os12g10810
Os.54088.1.S1_at--776--7451Chr12:5818060..5818084 (25 bp)
GTGTCTGTGTCAATTGTCAGGGCAA
LOC_Os12g10810
Os.54088.1.S1_at--999--8231Chr12:5818080..5818104 (25 bp)
GGCAAATCTTGTAGACCCAACCATA
LOC_Os12g10810
Target Sequence 
ACTTGTCACGTTAGTTATATGCCCCCACAAATTAAGCTCTTTCAAGGTCCAATTGATAAGCTAGGTGACCAAAATAGGTT
TGTAGTTGCTGCAAAGCTGAATACTCTGATGATTACAGAGTTCAAGCTTGTTCATCAGCACGACTCAATCAGTCAGAGAT
TTGAGTCCATGGTTATGCCACATGGAAGTAAGTTCCACTATGCCAAGTTAGCGGATTTAGCAACTATAGGCGTGGAGATC
TTTTGGTCAATTTTACCCATTTAGCTACAAGAAAGCTTTCGAGCCTTCTACTTTGTTACATTCTATTTATTTTCTGGCAA
ACAATCACCTACCTGTAAATAGCTAGAGCAATGCAAGTTTCTTTTTTAGGATTTGTGCCATGTATGTATCATTTCCATAT
GAACCAACCAAGGCTTCATGTGTCTGTGTCAATTGTCAGGGCAAATCTTGTAGACCCAACCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis