Browse Element(s) Details


Os.54108.1.S1_at

Description gb:AK101981.1
DB_XREF= gi:32987190
TID=Os.54108.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033077K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033077K20, full insert sequence.
FL= gb:AK101981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0295011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein
LOC_Os07g02980Os.33868.1.S1_at7/117+1108798..1110321hypothetical protein
LOC_Os07g02990Os.23216.2.S1_x_at11/117+1112268..1114597expressed protein
LOC_Os07g02990Os.23216.1.S1_at11/117+1112268..1114597expressed protein
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54108.1.S1_at--837--611Chr07:1095091..1095115 (25 bp)
ATGCTACTCGTGGAATGACCTTCTG
LOC_Os07g02950
Os.54108.1.S1_at--860--3071Chr07:1095064..1095088 (25 bp)
AATCAGTTTATCCTTTGCTCTGGTC
LOC_Os07g02950
Os.54108.1.S1_at--538--4811Chr07:1095048..1095072 (25 bp)
GCTCTGGTCTTTATGTTGTATGGTC
LOC_Os07g02950
Os.54108.1.S1_at--331--6931Chr07:1095031..1095055 (25 bp)
GTATGGTCCGATTCATGCAACAAAC
LOC_Os07g02950
Os.54108.1.S1_at--453--131Chr07:1094997..1095021 (25 bp)
ATTAATCTTCTGTTCTCCACAAGGC
LOC_Os07g02950
Os.54108.1.S1_at--470--571Chr07:1094956..1094980 (25 bp)
ATCCTTGTCAGGGTGGCCGCTGCAA
LOC_Os07g02950
Os.54108.1.S1_at--424--9471Chr07:1094867..1094891 (25 bp)
TCTGGGCCTAATTTCATGTTGCTTA
LOC_Os07g02950
Os.54108.1.S1_at--12--7371Chr07:1094820..1094844 (25 bp)
GTGAAATACTCATTCTCCTGTCTCG
LOC_Os07g02950
Os.54108.1.S1_at--591--9271Chr07:1094805..1094829 (25 bp)
TCCTGTCTCGCCTTAAAACTGATTG
LOC_Os07g02950
Os.54108.1.S1_at--565--1671Chr07:1094758..1094782 (25 bp)
AGCCTGCCCCTTGAAACGAATGAAA
LOC_Os07g02950
Os.54108.1.S1_at--738--2531Chr07:1094705..1094729 (25 bp)
AACTCTCCTGCTACATCAATACATA
LOC_Os07g02950
Target Sequence 
ATGCTACTCGTGGAATGACCTTCTGGTAATCAGTTTATCCTTTGCTCTGGTCTTTATGTTGTATGGTCCGATTCATGCAA
CAAACAAATGTTGAATTAATCTTCTGTTCTCCACAAGGCTCATCCGCCGTTTGGCATCCTTGTCAGGGTGGCCGCTGCAA
AATGGAGGTGCAATCAGCTTGATTATCTTCTCTTGATTTACTAGTATACCTTTAGCCCTACTTTTCTGGGCCTAATTTCA
TGTTGCTTATGAGTTACATGAACCATTAGCAGTGAAATACTCATTCTCCTGTCTCGCCTTAAAACTGATTGATCATTTTC
ATACGTGAACACTAGCCTGCCCCTTGAAACGAATGAAATTATCCTGTACATGTTACTTTCTAACTGAACTCTCCTGCTAC
ATCAATACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis