Browse Element(s) Details


Os.54124.1.S2_at

Description gb:AK102059.1
DB_XREF= gi:32987268
TID=Os.54124.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082D08, full insert sequence.
FL= gb:AK102059.1 gb:AK105655.1 gb:AK103100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0625011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein
LOC_Os12g06240OsAffx.31612.1.S1_at10/1112+2966582..2967203hypothetical protein
LOC_Os12g06250Os.54124.1.S1_at11/1112+2969930..2973161expressed protein
LOC_Os12g06250Os.54124.1.S2_at11/1112+2969930..2973161expressed protein
LOC_Os12g06260Os.9526.1.S1_at11/1112+2978506..2979852Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06270Os.48434.1.A1_at2/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06270OsAffx.9699.1.S1_at1/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06280Os.22827.1.A1_at10/1112+2995187..2995807expressed protein
LOC_Os12g06280Os.22827.1.A1_x_at9/1112+2995187..2995807expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54124.1.S2_at--370--9572Chr12:2972676..2972700 (25 bp)
TCTTCTATCTATCTTGTTGGACTAC
LOC_Os12g06250
Os.54124.1.S2_at--611--10232Chr12:2972728..2972752 (25 bp)
TTTGGTTAGCTTTGTCTTGATCCCT
LOC_Os12g06250
Os.54124.1.S2_at--63--7151Chr12:2972741..2972765 (25 bp)
GTCTTGATCCCTTCTTTGCTAGAAA
LOC_Os12g06250
Os.54124.1.S2_at--527--6911Chr12:2972798..2972822 (25 bp)
GTATGCACACTATAGGTCTGTTCTG
LOC_Os12g06250
Os.54124.1.S2_at--384--233Chr12:2972831..2972855 (25 bp)
ATATTCTCACTGATATACTGACAGC
LOC_Os12g06250
Os.54124.1.S2_at--900--1971Chr12:2972847..2972871 (25 bp)
ACTGACAGCTAGAACCTTTCCTTTT
LOC_Os12g06250
Os.54124.1.S2_at--342--6271Chr12:2972917..2972941 (25 bp)
GATGTGTTCAGCTTTTTGACTAGTG
LOC_Os12g06250
Os.54124.1.S2_at--229--6512Chr12:2972967..2972991 (25 bp)
GATATAGGTCCTACAACATGCTAAC
LOC_Os12g06250
Os.54124.1.S2_at--259--6511Chr12:2972999..2973023 (25 bp)
GATATCTGTGCACTTAGTTTTGTTA
LOC_Os12g06250
Os.54124.1.S2_at--1074--6191Chr12:2973039..2973063 (25 bp)
GAGGCACAGATCTCACATTCAGATG
LOC_Os12g06250
Os.54124.1.S2_at--1016--3131Chr12:2973075..2973099 (25 bp)
AATTACTGCTCTTACTCTAGTCAAG
LOC_Os12g06250
Target Sequence 
TCTTCTATCTATCTTGTTGGACTACATACATAGTTAGTTAGCTGAAATGACATTTGGTTAGCTTTGTCTTGATCCCTTCT
TTGCTAGAAAAGACATGTTTCTACAAATCTATAGTGATTTATGTATGCACACTATAGGTCTGTTCTGTAATTTTAATATT
CTCACTGATATACTGACAGCTAGAACCTTTCCTTTTTTTCCAGCAAATAATCAATCCGCAATGGGGGGCAGGGTGATCAA
TGATGTGTTCAGCTTTTTGACTAGTGACAGAAGTACATATATATGTATTCAGATATAGGTCCTACAACATGCTAACAATT
TTAGATATCTGTGCACTTAGTTTTGTTAAAAGCTCAGATAGCAGAGGCACAGATCTCACATTCAGATGTCACTATGTTTA
ATTACTGCTCTTACTCTAGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54124.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis