Browse Element(s) Details


Os.54151.1.S1_x_at

Description gb:AK102198.1
DB_XREF= gi:32987407
TID=Os.54151.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087D11, full insert sequence.
FL= gb:AK102198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g158204/11retrotransposon protein, putative, unclassified, expressed
LOC_Os03g238104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g115004/11retrotransposon protein, putative, unclassified
LOC_Os07g098144/11F-box domain containing protein, expressed
LOC_Os11g279504/11retrotransposon protein, putative, unclassified
LOC_Os08g222304/11transposon protein, putative, Pong sub-class
LOC_Os05g037204/11retrotransposon protein, putative, unclassified
LOC_Os04g074104/11retrotransposon protein, putative, unclassified
LOC_Os04g181704/11retrotransposon protein, putative, unclassified
LOC_Os05g424323/11retrotransposon protein, putative, unclassified
LOC_Os12g120302/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g394702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g384902/11hypothetical protein
LOC_Os11g201202/11retrotransposon protein, putative, unclassified
LOC_Os10g120102/11retrotransposon protein, putative, unclassified
LOC_Os09g046602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g230301/11expressed protein
LOC_Os04g189801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g178301/11transposon protein, putative, Mutator sub-class
LOC_Os03g339801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15790OsAffx.14713.1.S1_at10/115+8890086..8890606hypothetical protein
LOC_Os05g15800OsAffx.14714.1.S1_at11/115+8898037..8899438hypothetical protein
LOC_Os05g15810NANA5+8901266..8905597retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15820Os.38764.1.S1_x_at11/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820OsAffx.31813.1.S1_x_at6/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820Os.54151.1.S1_x_at4/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820Os.46610.1.S1_x_at4/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15830OsAffx.3496.1.S1_x_at2/115+8915827..8917045retrotransposon protein, putative, unclassified
LOC_Os05g15830OsAffx.28492.1.S1_at1/115+8915827..8917045retrotransposon protein, putative, unclassified
LOC_Os05g15840OsAffx.18229.1.S1_x_at1/115+8917883..8922376retrotransposon protein, putative, unclassified
LOC_Os05g15850OsAffx.26914.1.S1_at11/115+8927584..8928656Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15860NANA5+8931006..8933564retrotransposon protein, putative, unclassified
LOC_Os05g15870OsAffx.26915.1.S1_at10/115+8934595..8937329hypothetical protein
LOC_Os05g15880Os.53670.1.S1_at11/115+8938717..8939867Xylanase inhibitor protein 2 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54151.1.S1_x_at--327--1791Chr04:8419015..8419039 (25 bp)
ACCGCCGTTGTTGTCGTCACTTCAG
NONE
Os.54151.1.S1_x_at--824--8811Chr04:8419007..8419031 (25 bp)
TGTTGTCGTCACTTCAGCCGCGCCG
NONE
Os.54151.1.S1_x_at--718--4151Chr04:8418871..8418895 (25 bp)
CGCCGACGTAGACCCGAGCCGAGCC
NONE
Os.54151.1.S1_x_at--269--10053Chr03:19346302..19346655 (25 bp)
TAGTTCTTTGCACCGTTTCCGACGT
LOC_Os03g33980
Os.54151.1.S1_x_at--403--2872Chr11:15535062..15535082 (21 bp)
AAGTGTTTGAGGAAGCTCAAGTTGA
NONE
Os.54151.1.S1_x_at--491--899214Chr12:12720719..12720743 (25 bp)
TGAAGCCATCGCTAGACCGTTAATT
NONE
Os.54151.1.S1_x_at--85--265214Chr12:5537241..5537265 (25 bp)
AAGCCATCGCTAGACCGTTAATTCC
NONE
Os.54151.1.S1_x_at--353--337133Chr12:5537245..5537269 (25 bp)
CATCGCTAGACCGTTAATTCCGCTG
NONE
Os.54151.1.S1_x_at--142--935125Chr12:5537247..5537271 (25 bp)
TCGCTAGACCGTTAATTCCGCTGCT
NONE
Os.54151.1.S1_x_at--920--10571Chr04:8417085..8417109 (25 bp)
TTCTCGACGAGGGTTTTATGTACAA
NONE
Os.54151.1.S1_x_at--11--9511Chr04:8417084..8417108 (25 bp)
TCTCGACGAGGGTTTTATGTACAAA
NONE
Target Sequence 
ACCGCCGTTGTTGTCGTCACTTCAGCCGCGCCGCGCCGCTGCTGTGGTCGTCGCCGCCACCTTCTGTCGCCACCGTCGGG
TTCGTGAGAAGGAGGAGCACCCCGTCCGCCCCTTTGCAGCCGCCGAAGACCGCCGGAGCGCCGTCGCCGACGTAGACCCG
AGCCGAGCCGCCGTCGGACCTCGTCGCCGGCCGTCGTTTGTCGTCGTTCGTCGTAGTTCTTTGCACCGTTTCCGACGTTC
CGGAAGAGAGCGTTTACGTTGAGGAAGGTTCAGAAGTGTTTGAGGAAGCTCAAGTTGAAGAAAAAGGATCCAGAAGGAGA
AGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCCATCGCTAGACCGTTAATTCCGCTGCTG
TTTTCTTTTCTTTTGTAAGTATGTAGCGTTATTATTATGATGGATTTGTATATTAAATTGTCAGTTTGTGTACCTCGGCT
GATTTCTCGACGAGGGTTTTATGTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54151.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis