Browse Element(s) Details


Os.54161.1.S1_at

Description gb:AK102241.1
DB_XREF= gi:32987450
TID=Os.54161.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088D07, full insert sequence.
FL= gb:AK102241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6413011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64080Os.9258.1.S1_at11/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64080OsAffx.8397.1.S1_at1/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64100Os.57012.1.S1_at10/113+36163263..36164076expressed protein
LOC_Os03g64110Os.8431.1.S1_at11/113+36167701..36171908WD domains, G-beta repeats containing protein, putative, expressed
LOC_Os03g64130Os.54161.1.S1_at11/113+36178046..36179803expressed protein
LOC_Os03g64140Os.22699.1.S1_at11/113+36182043..36184058expressed protein
LOC_Os03g64150Os.56156.1.S1_at11/113+36185076..36186672MATE efflux family protein, expressed
LOC_Os03g64160OsAffx.29536.4.S1_x_at1/113+36190197..36191881hypothetical protein
LOC_Os03g64170Os.56325.1.S1_at11/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64170Os.49174.1.S1_at10/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54161.1.S1_at--104--2011Chr03:36178461..36178485 (25 bp)
ACTCAGACGCTGGTGGTGCAGACGC
LOC_Os03g64130
Os.54161.1.S1_at--1083--9111Chr03:36178391..36178415 (25 bp)
TGCTGGTGGGCCTCAACTACCTCTG
LOC_Os03g64130
Os.54161.1.S1_at--505--9491Chr03:36178370..36178394 (25 bp)
TCTGCCGCTTTCACAAGGAGATCAC
LOC_Os03g64130
Os.54161.1.S1_at--62--1711Chr03:36178322..36178346 (25 bp)
ACCACGACGATGCACCATGACAACG
LOC_Os03g64130
Os.54161.1.S1_at--815--671Chr03:36178306..36178330 (25 bp)
ATGACAACGTGCATGCTGCTTCAAG
LOC_Os03g64130
Os.54161.1.S1_at--810--7331Chr03:36178298..36178322 (25 bp)
GTGCATGCTGCTTCAAGACGACGAT
LOC_Os03g64130
Os.54161.1.S1_at--340--5791Chr03:36178282..36178306 (25 bp)
GACGACGATGTACGATTGCCAATGG
LOC_Os03g64130
Os.54161.1.S1_at--733--2151Chr03:36178235..36178259 (25 bp)
ACACCGATCGTCTGATCCATGCTCT
LOC_Os03g64130
Os.54161.1.S1_at--202--8651Chr03:36178122..36178146 (25 bp)
TGGGCTGGCATCTGGGTGATCTCCA
LOC_Os03g64130
Os.54161.1.S1_at--321--6371Chr03:36178105..36178129 (25 bp)
GATCTCCAGTACTAGTTAAGTCGAT
LOC_Os03g64130
Os.54161.1.S1_at--955--7991Chr03:36178047..36178071 (25 bp)
GGATGGAATCTTGCTTCATTATATT
LOC_Os03g64130
Target Sequence 
ACTCAGACGCTGGTGGTGCAGACGCTGCAAATGGCGGAGCGCGGGAAGGTGGAGGCGGCGGTGGCGGAGCTGCTGGTGGG
CCTCAACTACCTCTGCCGCTTTCACAAGGAGATCACCACCTGCCGTACCCGTACGTGCCACCACGACGATGCACCATGAC
AACGTGCATGCTGCTTCAAGACGACGATGTACGATTGCCAATGGAACAGTATGCATCCATCCATCCACACCGATCGTCTG
ATCCATGCTCTCATCTTCTCTTCTTTAGTTTTTCTTTTGTTTTTTTGGGATGGATCCCAATTCCCAAGTACCCAATTGGC
TAATGGAGTAGGAGATGCATGGGCTGGCATCTGGGTGATCTCCAGTACTAGTTAAGTCGATTGATGAGAATGGAGTTTTC
TGATAATTGGAGCAGGATGGAATCTTGCTTCATTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis