Browse Element(s) Details


Os.54175.1.S1_at

Description gb:AK102359.1
DB_XREF= gi:32987568
TID=Os.54175.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091I05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091I05, full insert sequence.
FL= gb:AK102359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0387011/11expressed protein
LOC_Os12g431501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03810NANA5+1673273..1675282trehalose-phosphatase family protein
LOC_Os05g03820Os.12568.2.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_x_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_x_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830Os.23217.1.S1_s_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03840OsAffx.4243.1.S1_at11/115+1685199..1687100Glycosyl hydrolase family 9 protein
LOC_Os05g03850NANA5+1694722..1694979retrotransposon protein, putative, unclassified
LOC_Os05g03860Os.3373.1.S1_at11/115+1695736..1697113bZIP transcription factor family protein, expressed
LOC_Os05g03870Os.54175.1.S1_at11/115+1698490..1699237expressed protein
LOC_Os05g03884OsAffx.2978.2.S1_s_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03884Os.4162.1.S1_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03900OsAffx.26722.1.S1_at11/115+1721096..1723308WRKY DNA binding domain containing protein, expressed
LOC_Os05g03900OsAffx.26722.2.S1_s_at11/115+1721096..1723308WRKY DNA binding domain containing protein, expressed
LOC_Os05g03910Os.16058.1.S1_at11/115+1722623..1726877TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54175.1.S1_at--433--691Chr05:1698683..1698707 (25 bp)
ATGTTTGGGCACACGCCGTTGTTTC
LOC_Os05g03870
Os.54175.1.S1_at--951--511Chr05:1698770..1698794 (25 bp)
ATCGAGACCAGTAGAGGCACATGCG
LOC_Os05g03870
Os.54175.1.S1_at--796--932Chr05:1698784..1698808 (25 bp)
AGGCACATGCGAAGTGGGTTCCCAT
LOC_Os05g03870
Os.54175.1.S1_at--601--2873Chr05:1698795..1698819 (25 bp)
AAGTGGGTTCCCATGGCGCCATGAT
LOC_Os05g03870
Os.54175.1.S1_at--213--7912Chr05:1699011..1699035 (25 bp)
GGTTGCTCTCCAAGCACGGCGAGGT
LOC_Os05g03870
Os.54175.1.S1_at--1161--172Chr05:1699043..1699067 (25 bp)
ATTTACCTTGTCTAGTTCATGCCAC
LOC_Os05g03870
Os.54175.1.S1_at--562--592Chr05:1699061..1699085 (25 bp)
ATGCCACTAGAGTTGAAGCCGTGTT
LOC_Os05g03870
Os.54175.1.S1_at--432--4492Chr05:1699078..1699102 (25 bp)
GCCGTGTTCGATTCAATTTGGGATA
LOC_Os05g03870
Os.54175.1.S1_at--329--3131Chr05:1699115..1699139 (25 bp)
AATTTCAAATCTCGGTGCTTATTCG
LOC_Os05g03870
Os.54175.1.S1_at--555--10211Chr05:1699134..1699158 (25 bp)
TATTCGAGAAACCTGGAAGCTGCAA
LOC_Os05g03870
Os.54175.1.S1_at--370--8191Chr05:1699148..1699172 (25 bp)
GGAAGCTGCAATTACTATCTAGTAC
LOC_Os05g03870
Target Sequence 
ATGTTTGGGCACACGCCGTTGTTTCCATTACACCACGCCGCCGCCGCCGCCGACGACGACGACGACAACGACACCTCCCC
ACTGGCGATCGAGACCAGTAGAGGCACATGCGAAGTGGGTTCCCATGGCGCCATGATGGCAGGAAGCAGTGAGAGCGAGT
ACTACTCGGAGGAGGAGGTGGGATGGGAGGAGGAAGGTCTCGGAAGCAAAGGCGTGGAGGAGAAGAGGGAGTGGGCACTG
AAGCGGCTCGACGACCTCGGCAAGCGCGGGGTGTGCTACCTCAGCCGCGTCCCTCCCAACATGAACCCGTCGCACGTCCG
TCTCCGTCGGTTGCTCTCCAAGCACGGCGAGGTGTAGATGATTTACCTTGTCTAGTTCATGCCACTAGAGTTGAAGCCGT
GTTCGATTCAATTTGGGATATGTATGGTGGTTAATTTCAAATCTCGGTGCTTATTCGAGAAACCTGGAAGCTGCAATTAC
TATCTAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis