Browse Element(s) Details


Os.54202.1.S1_at

Description gb:AK102497.1
DB_XREF= gi:32987706
TID=Os.54202.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095A21, full insert sequence.
FL= gb:AK102497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4799011/11OB-fold nucleic acid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47960Os.55210.1.S1_at10/113+27214733..27217751HECT-domain-containing protein, putative, expressed
LOC_Os03g47970Os.2857.1.S1_at11/113+27218880..27223289GATA transcription factor 27, putative, expressed
LOC_Os03g47980Os.50357.1.S1_at10/113+27225595..27231444expressed protein
LOC_Os03g47990Os.54202.1.S1_at11/113+27232247..27235321OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g48000Os.27805.1.S1_at10/113+27237026..27243529magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g48010OsAffx.13399.1.S1_at11/113+27246577..27249455expressed protein
LOC_Os03g48030Os.14520.1.S1_at11/113+27249900..27252172HPP family protein, expressed
LOC_Os03g48020Os.54898.1.S1_at11/113+27251268..27253126expressed protein
LOC_Os03g48040Os.50976.1.S1_at10/113+27259030..27262075ferredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54202.1.S1_at--592--4071Chr03:27232665..27232689 (25 bp)
CGAGATCACGCTCACACCGAAGGAG
LOC_Os03g47990
Os.54202.1.S1_at--62--5571Chr03:27233257..27233281 (25 bp)
GAAAGGAATCTCTTCCTCGGGCCAA
LOC_Os03g47990
Os.54202.1.S1_at--529--351Chr03:27234927..27234951 (25 bp)
ATAAGCTAGTCGATCTTTCCGCGCA
LOC_Os03g47990
Os.54202.1.S1_at--315--5071Chr03:27234949..27234973 (25 bp)
GCAGCCCGACCGTGAATCAATGTGG
LOC_Os03g47990
Os.54202.1.S1_at--717--2051Chr03:27234999..27235023 (25 bp)
ACTTCTTTTACTTGCAGTTCTCGGC
LOC_Os03g47990
Os.54202.1.S1_at--325--8331Chr03:27235021..27235045 (25 bp)
GGCTGCTAGCCCACTGATGAAGCGC
LOC_Os03g47990
Os.54202.1.S1_at--176--8871Chr03:27235035..27235059 (25 bp)
TGATGAAGCGCTAGTGTCCCTGACC
LOC_Os03g47990
Os.54202.1.S1_at--534--1291Chr03:27235080..27235104 (25 bp)
AGATGCTTCGTTTGGCTGTAGGCCT
LOC_Os03g47990
Os.54202.1.S1_at--905--10651Chr03:27235119..27235143 (25 bp)
TTCCTAACACTTGTCCAGTGCCTAT
LOC_Os03g47990
Os.54202.1.S1_at--296--3111Chr03:27235171..27235195 (25 bp)
AATATGTACTCCTTCGAGCATCTCA
LOC_Os03g47990
Os.54202.1.S1_at--430--5931Chr03:27235186..27235210 (25 bp)
GAGCATCTCACATTGTGGTCGTTCA
LOC_Os03g47990
Target Sequence 
CGAGATCACGCTCACACCGAAGGAGNCCGAGGGGCAGCCATGGCGAGAAGGCATGTATGTGATGGTTCTTGGGTCATATA
GTGGAAAGGAATCTCTTCCTCGGGCCAATCGGCCAGTGATTAAGGTGCATAAGCTAGTCGATCTTTCCGCGCAGCCCGAC
CGTGAATCAATGTGGTACATGGAAGTAGTTGAGGCCTTCAACTTCTTTTACTTGCAGTTCTCGGCTGCTAGCCCACTGAT
GAAGCGCTAGTGTCCCTGACCTCTTGTTCTCTCCAGTGNTCAGATGCTTCGTTTGGCTGTAGGCCTGTAGGCTGTAGCCC
TTCCTAACACTTGTCCAGTGCCTATTTTTNACGGGTAGTTTTTGTTAGGGCTAATATGTACTCCTTCGAGCATCTCACAT
TGTGGTCGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis