Browse Element(s) Details


Os.54204.1.S1_at

Description gb:AK102513.1
DB_XREF= gi:32987722
TID=Os.54204.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095I19, full insert sequence.
FL= gb:AK102513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g361801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36130OsAffx.32051.1.S1_x_at8/1112+22116085..22117073hypothetical protein
LOC_Os12g36140OsAffx.20387.1.S1_x_at1/1112+22118132..22120811transposon protein, putative, unclassified
LOC_Os12g36150NANA12+22121127..22123877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g36160OsAffx.7804.1.S1_at11/1112+22127940..22128995hypothetical protein
LOC_Os12g36170Os.53964.1.S1_at11/1112+22130214..22136367G14587-6, putative, expressed
LOC_Os12g36180Os.10153.1.S2_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.10153.1.S1_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.54204.1.S1_at1/1112+22139829..22147027expressed protein
LOC_Os12g36194Os.5218.1.S1_at11/1112+22149447..22156123Nucleoside diphosphate kinase 2, chloroplast precursor, putative, expressed
LOC_Os12g36210NANA12+22159870..22160378Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36220Os.9273.1.S1_x_at9/1112+22164073..22164918MPI, putative
LOC_Os12g36230Os.52447.1.S1_x_at1/1112+22167689..22168066retrotransposon, putative, centromere-specific
LOC_Os12g36240Os.9169.1.S1_x_at10/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed
LOC_Os12g36240Os.9273.1.S1_x_at1/1112+22169189..22169700Subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54204.1.S1_at--427--1011Chr10:14540270..14540294 (25 bp)
AGAGTCCTAACTTTCGTTGGGCCTG
NONE
Os.54204.1.S1_at--317--6631Chr10:14540255..14540279 (25 bp)
GTTGGGCCTGGCTTATGATACAAGA
NONE
Os.54204.1.S1_at--1046--6311Chr10:14540164..14540188 (25 bp)
GATGAACCGCAGAGTGCCTTGTTCT
NONE
Os.54204.1.S1_at--242--10791Chr10:14540146..14540170 (25 bp)
TTGTTCTCTCGCAGTACTTTGTGGT
NONE
Os.54204.1.S1_at--956--1171Chr10:14540111..14540135 (25 bp)
AGTACTGAGTACGACTGCTGATTAC
NONE
Os.54204.1.S1_at--456--3871Chr10:14540094..14540118 (25 bp)
CTGATTACTTAATTGGATGCTGACA
NONE
Os.54204.1.S1_at--909--9111Chr10:14540077..14540101 (25 bp)
TGCTGACAGCACTTGGTTATTCTCT
NONE
Os.54204.1.S1_at--910--7872Chr12:22141474..22141576 (24 bp)
GGTTATTCTCTTGGTTTGCACTAAT
LOC_Os12g36180
Os.54204.1.S1_at--125--10311Chr10:14540029..14540053 (25 bp)
TTTCTTTGGACGTTTTTGGGCAGAT
NONE
Os.54204.1.S1_at--56--1551Chr10:14539919..14539943 (25 bp)
AGCATCAGTCAAGTCTACAGAGTGG
NONE
Os.54204.1.S1_at--161--2851Chr10:14539785..14539809 (25 bp)
AAGTCTCTCTACCAATGCCAGCTTT
NONE
Target Sequence 
AGAGTCCTAACTTTCGTTGGGCCTGGCTTATGATACAAGATTAACATGATTTTATCTGGTTCATTTATTTGATGTATTTT
TTGGTGTGGTTCTTGTTGGAAAAAGAGATGAACCGCAGAGTGCCTTGTTCTCTCGCAGTACTTTGTGGTAGCTGAGAACA
GTACTGAGTACGACTGCTGATTACTTAATTGGATGCTGACAGCACTTGGTTATTCTCTTGGTTTGCACTAATATGAATGT
TTTTCTTTGGACGTTTTTGGGCAGATGATGGACATTGGTGGTGAAGGAGATCCGTAGGTGCAAGATGAGGACCATATGAA
TTTGGTGAGACAGTTTTAGCTTTATCATCTTAGCATCAGTCAAGTCTACAGAGTGGAGTTGAGGTGGTGATTGATGTTTG
ACCATCAAGCAGGTGGTGCTTTTCGCAACTTCACCTGACCTTTTTTTTTTTGTCCAATTGCTGAGTGAAAACATATGTGA
TGTCTCAAGTCTCTCTACCAATGCCAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis