Browse Element(s) Details


Os.54257.1.S1_at

Description gb:AK102853.1
DB_XREF= gi:32988062
TID=Os.54257.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110K06, full insert sequence.
FL= gb:AK102853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3522011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35170Os.24831.3.S1_s_at6/1111+20126608..20127864retrotransposon protein, putative, unclassified
LOC_Os11g35170Os.24831.1.S1_x_at5/1111+20126608..20127864retrotransposon protein, putative, unclassified
LOC_Os11g35170Os.24831.3.S1_x_at3/1111+20126608..20127864retrotransposon protein, putative, unclassified
LOC_Os11g35170Os.24831.4.S1_x_at1/1111+20126608..20127864retrotransposon protein, putative, unclassified
LOC_Os11g35180NANA11+20131103..20131924retrotransposon protein, putative, unclassified
LOC_Os11g35189NANA11+20133561..20133816NA
LOC_Os11g35200NANA11+20136350..20141312retrotransposon protein, putative, unclassified
LOC_Os11g35210OsAffx.19170.1.S1_at11/1111+20142111..20146357NB-ARC domain containing protein
LOC_Os11g35210OsAffx.7298.1.S1_at11/1111+20142111..20146357NB-ARC domain containing protein
LOC_Os11g35220Os.54257.1.S1_at11/1111+20149757..20152828Protein kinase domain containing protein, expressed
LOC_Os11g35230OsAffx.31305.1.S1_at11/1111+20157500..20157883hypothetical protein
LOC_Os11g35240OsAffx.5632.1.S1_at2/1111+20158965..20160583transposon protein, putative, unclassified, expressed
LOC_Os11g35240OsAffx.5632.1.S1_x_at2/1111+20158965..20160583transposon protein, putative, unclassified, expressed
LOC_Os11g35250Os.2987.3.S1_x_at2/1111+20161848..20162456transposon protein, putative, unclassified
LOC_Os11g35260OsAffx.7299.1.S1_at11/1111+20166289..20166966Protein kinase domain containing protein
LOC_Os11g35274OsAffx.19171.1.S1_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed
LOC_Os11g35274OsAffx.19171.1.S1_s_at11/1111+20171076..20175376Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54257.1.S1_at--333--7751Chr11:20150312..20150336 (25 bp)
GGTGTCGTTCTCTTTGAACTCATCA
LOC_Os11g35220
Os.54257.1.S1_at--578--2451Chr11:20150255..20150279 (25 bp)
AACAATCGTCGACTCATCCCTGAAT
LOC_Os11g35220
Os.54257.1.S1_at--403--5211Chr11:20150234..20150258 (25 bp)
GAATTCATCAGAGCTTACGAGACAG
LOC_Os11g35220
Os.54257.1.S1_at--888--4751Chr11:20150171..20150195 (25 bp)
GCTGAAGAAGATATCGCTGTCCTTG
LOC_Os11g35220
Os.54257.1.S1_at--1152--7531Chr11:20150078..20150102 (25 bp)
GTGGCTGAACGCCTTAAGATGATCA
LOC_Os11g35220
Os.54257.1.S1_at--776--2931Chr11:20149991..20150015 (25 bp)
AAGGCTGTTGGCATCGCTGAAACCG
LOC_Os11g35220
Os.54257.1.S1_at--742--6251Chr11:20149951..20149975 (25 bp)
GATGGGCCACAACTGATTGTTCCCT
LOC_Os11g35220
Os.54257.1.S1_at--292--8831Chr11:20149938..20149962 (25 bp)
TGATTGTTCCCTTTCAGTCTTTCAC
LOC_Os11g35220
Os.54257.1.S1_at--1059--3431Chr11:20149924..20149948 (25 bp)
CAGTCTTTCACCTGAGAGATCGTTT
LOC_Os11g35220
Os.54257.1.S1_at--884--6871Chr11:20149836..20149860 (25 bp)
GTATTCTCTATTGGCAGTTTGTCAC
LOC_Os11g35220
Os.54257.1.S1_at--750--1671Chr11:20149765..20149789 (25 bp)
AGCCGTTGTCGTATTGTTTTGTCTG
LOC_Os11g35220
Target Sequence 
GGTGTCGTTCTCTTTGAACTCATCAGCAGGAAGAAACCTGTATATCATTGTCATGACAACAATCGTCGACTCATCCCTGA
ATTCATCAGAGCTTACGAGACAGCCAAGAGTGGGAAGGCAATGTTTGATGAAGGGATCATGGCTGAAGAAGATATCGCTG
TCCTTGAAGAGATTGGGAGGCTGGCAATGGAGTGCGTCAGCTTGGAAATCGACGGAAGGCCGACGATGAAGGAAGTGGCT
GAACGCCTTAAGATGATCAGGAGAATGAAGGAGAGCTCAGCCATGGGAGCAGCGAGATGCTAACTGAAGCAGAAGCTATA
GAAGGCTGTTGGCATCGCTGAAACCGAAGATGAAGCCAACTGATGGGCCACAACTGATTGTTCCCTTTCAGTCTTTCACC
TGAGAGATCGTTTACAGAGTATCATCAGAAACATAGTGTGTACTGTTTGGTTGTTAACTGTGTTATATAACATACTGTAT
TCTCTATTGGCAGTTTGTCACCATATATATAAGACTATATGGACTATTTTTGGTTGTTGGTTTTGTAAGCCGTTGTCGTA
TTGTTTTGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis