Browse Element(s) Details


Os.54328.1.S1_at

Description gb:AK103389.1
DB_XREF= gi:32988598
TID=Os.54328.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127K18, full insert sequence.
FL= gb:AK103389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0276011/11expressed protein
LOC_Os11g028002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02710Os.54077.1.S1_at11/1112+946150..949199expressed protein
LOC_Os12g02720Os.53587.1.S1_at11/1112+953506..954644eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os12g02730Os.17056.1.A1_at11/1112+965058..968456expressed protein
LOC_Os12g02730Os.40337.1.S1_s_at5/1112+965058..968456expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_s_at11/1112+970331..974926expressed protein
LOC_Os12g02750Os.53770.1.S1_at10/1112+970331..974926expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_at8/1112+970331..974926expressed protein
LOC_Os12g02760Os.54328.1.S1_at11/1112+974104..976096expressed protein
LOC_Os12g02770NANA12+977181..977828retrotransposon protein, putative, unclassified
LOC_Os12g02780NANA12+979692..981314retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02790NANA12+985410..986157expressed protein
LOC_Os12g02800Os.52568.1.S1_s_at11/1112+987599..988874expressed protein
LOC_Os12g02800Os.52568.1.S1_at11/1112+987599..988874expressed protein
LOC_Os12g02810Os.12636.1.S1_at11/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810OsAffx.18642.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810Os.54274.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54328.1.S1_at--53--771Chr12:974561..974585 (25 bp)
ATGTCAGGATGTACCCATGCGTCGT
LOC_Os12g02760
Os.54328.1.S1_at--75--611Chr12:974545..974569 (25 bp)
ATGCGTCGTCAGATCGTACTGGCCA
LOC_Os12g02760
Os.54328.1.S1_at--381--4451Chr12:974513..974537 (25 bp)
GCCTTCTCAATCGAGGGCAGTTTCA
LOC_Os12g02760
Os.54328.1.S1_at--1115--2671Chr12:974425..974449 (25 bp)
AAGCTGGAGCAGCATCATTGTCACT
LOC_Os12g02760
Os.54328.1.S1_at--308--3611Chr12:974410..974434 (25 bp)
CATTGTCACTGACTCTTGCTGAAGA
LOC_Os12g02760
Os.54328.1.S1_at--639--6812Chr12:974384..974408 (25 bp)
GTTTTCAGTCTTGAGGTCCAACCGA
LOC_Os12g02760
Os.54328.1.S1_at--888--851Chr12:974339..974363 (25 bp)
ATGGCTTTCGTCATTGTTCTGGATC
LOC_Os12g02760
Os.54328.1.S1_at--155--6411Chr12:974318..974342 (25 bp)
GATCGGATCTGCTGGAAGCCATACA
LOC_Os12g02760
Os.54328.1.S1_at--969--4432Chr12:974301..974325 (25 bp)
GCCATACACACCTATGATCTGTTCT
LOC_Os12g02760
Os.54328.1.S1_at--105--6412Chr12:974286..974310 (25 bp)
GATCTGTTCTTCATAGTTCAAGGTG
LOC_Os12g02760
Os.54328.1.S1_at--141--7012Chr12:974165..974189 (25 bp)
GTACTGTCGATTGACTGGGACTAAC
LOC_Os12g02760
Target Sequence 
ATGTCAGGATGTACCCATGCGTCGTCAGATCGTACTGGCCATGTTCCCGCCTTCTCAATCGAGGGCAGTTTCAAGAGAAG
AAGCTGCAAGATCCGCAACAGCGGCGGTGAGGAGGTCGCAAGGATAACGAGGAAGAAAGCTGGAGCAGCATCATTGTCAC
TGACTCTTGCTGAAGATGTTTTCAGTCTTGAGGTCCAACCGAATGTAGATTGTGCGATGATCATGGCTTTCGTCATTGTT
CTGGATCGGATCTGCTGGAAGCCATACACACCTATGATCTGTTCTTCATAGTTCAAGGTGATGAGCTCTATTTGACATGT
AGGAAATAGATGTTTCAATTCAAGTGAAATCGACGAATTAACTCAAGAAGCTAGTATGAGACTGTAGTCACTAATTGTAC
TGTCGATTGACTGGGACTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis