Browse Element(s) Details


Os.54347.1.S1_at

Description gb:AK103540.1
DB_XREF= gi:32988749
TID=Os.54347.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132C04, full insert sequence.
FL= gb:AK103540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1754011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17510Os.40360.1.S1_x_at1/119+10708899..10709978hypothetical protein
LOC_Os09g17520OsAffx.17757.1.S1_at11/119+10717518..10724105hypothetical protein
LOC_Os09g17520OsAffx.22564.2.S1_at1/119+10717518..10724105hypothetical protein
LOC_Os09g17520OsAffx.17424.1.S1_at1/119+10717518..10724105hypothetical protein
LOC_Os09g17530Os.57392.1.S1_at2/119+10731282..10732352F-box domain containing protein
LOC_Os09g17540Os.54347.1.S1_at11/119+10732801..10734332F-box domain containing protein, expressed
LOC_Os09g17550OsAffx.29895.1.S1_at11/119+10737215..10737792hypothetical protein
LOC_Os09g17560Os.53458.1.S1_at11/119+10739342..10740907O-methyltransferase family protein, expressed
LOC_Os09g17570OsAffx.30648.1.S1_at2/119+10745002..10746187hypothetical protein
LOC_Os09g17580OsAffx.6316.1.S1_x_at11/119+10750560..10751144expressed protein
LOC_Os09g17590NANA9+10754334..10755700hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54347.1.S1_at--916--7391Chr09:10733738..10733762 (25 bp)
GTGATGACACCTTGCTAGTCCTCGA
LOC_Os09g17540
Os.54347.1.S1_at--193--5731Chr09:10733772..10733796 (25 bp)
GACTGAGTTCGAGGTCCTCCGCTTA
LOC_Os09g17540
Os.54347.1.S1_at--720--9291Chr09:10733822..10733846 (25 bp)
TCCGAGCGATCGTTGATGGTGGCAA
LOC_Os09g17540
Os.54347.1.S1_at--279--1131Chr09:10733975..10733999 (25 bp)
AGTCCACCATGGGATTGGCTGGGTA
LOC_Os09g17540
Os.54347.1.S1_at--879--491Chr09:10734051..10734075 (25 bp)
ATCGGTTGTGTTAGCTCCGGTGGAA
LOC_Os09g17540
Os.54347.1.S1_at--447--1071Chr09:10734075..10734099 (25 bp)
AGGGATGACTTGGATGTTCTCCGTC
LOC_Os09g17540
Os.54347.1.S1_at--622--9791Chr09:10734137..10734161 (25 bp)
TAAGCGTGGCTGTTTACCCTTGTGA
LOC_Os09g17540
Os.54347.1.S1_at--251--6831Chr09:10734148..10734172 (25 bp)
GTTTACCCTTGTGAGCTGCCATGGC
LOC_Os09g17540
Os.54347.1.S1_at--784--4071Chr09:10734184..10734208 (25 bp)
CGAGCTTGTGTAACGCGTTGTGAGA
LOC_Os09g17540
Os.54347.1.S1_at--237--1031Chr09:10734219..10734243 (25 bp)
AGGTCGTTGCTCTCACATATGTATT
LOC_Os09g17540
Os.54347.1.S1_at--793--5831Chr09:10734302..10734326 (25 bp)
GACCTCCTTTCAAACTTGTGTGATT
LOC_Os09g17540
Target Sequence 
GTGATGACACCTTGCTAGTCCTCGACAAGTGGAGGACTGAGTTCGAGGTCCTCCGCTTACCGGGCAGTGTCCGAGCTTCG
GGGCTCCGAGCGATCGTTGATGGTGGCAATGGTGACAACGATGGCAAGTTGCGTGTTGTATGTTTGGATGAGGAAAATGT
CGTAAGGGTGTTCGCGACATGGCGGGGTCAGCATAGCAACGGCGAGTGGGTGCTTCAGAAGAGTCTCAGGTTAGAGGAGT
CCACCATGGGATTGGCTGGGTACAAGGCTGGACGCGGCGGCGCCGCCATGGTTGTCGCGGCGGCGACCGCCGGATCGGTT
GTGTTAGCTCCGGTGGAAGGGATGACTTGGATGTTCTCCGTCGACCTTGAGACCATGGAGATAGCTGAATGCAAGGAGGT
AAGCGTGGCTGTTTACCCTTGTGAGCTGCCATGGCGGCCTACGCTGCGAGCTTGTGTAACGCGTTGTGAGAGACGGGGCC
GAGGTCGTTGCTCTCACATATGTATTTGTGACGATGCTTAATGTTCTTAACTTTAGAAGTTAATGTTCTATACTGGAATT
TGAAGACCTCCTTTCAAACTTGTGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis