Browse Element(s) Details


Os.54352.1.S1_at

Description gb:AK103584.1
DB_XREF= gi:32988793
TID=Os.54352.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133B01, full insert sequence.
FL= gb:AK103584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4032010/11DNA damage binding protein 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40260Os.30657.1.S1_at11/111+23058791..23060071WRKY DNA binding domain containing protein, expressed
LOC_Os01g40280Os.8965.1.S1_at11/111+23069393..23074031integral to membrane protein, putative, expressed
LOC_Os01g40290Os.31171.1.S1_at11/111+23074202..23074991expressed protein
LOC_Os01g40299NANA1+23080123..23080936NA
LOC_Os01g40310Os.53702.1.S1_x_at10/111+23081366..23082260expressed protein
LOC_Os01g40310Os.8571.1.S1_s_at10/111+23081366..23082260expressed protein
LOC_Os01g40320Os.54352.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40320OsAffx.11402.1.S1_at10/111+23082927..23085727DNA damage binding protein 1, putative
LOC_Os01g40330Os.9702.1.S1_a_at11/111+23094797..23099463bZIP, putative, expressed
LOC_Os01g40340Os.7323.1.S1_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40340Os.45995.1.S1_x_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40350OsAffx.11403.1.S1_at9/111+23109762..23110364hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010100biological_processnegative regulation of photomorphogenesis
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003684molecular_functiondamaged DNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54352.1.S1_at--1149--9351NONE
TCGACCTCTCGAAATTTACCCGTAT
NONE
Os.54352.1.S1_at--780--3551Chr01:23083755..23083779 (25 bp)
CATCAGGGTCTTCAGGTCAGACAGA
LOC_Os01g40320
Os.54352.1.S1_at--770--5651Chr01:23083774..23083798 (25 bp)
GACAGATTTGCCTCGACCAGAATAT
LOC_Os01g40320
Os.54352.1.S1_at--963--6691Chr01:23083799..23083823 (25 bp)
GTTCCTTCTGTTTGAACCTATCTAT
LOC_Os01g40320
Os.54352.1.S1_at--280--7291Chr01:23083845..23083869 (25 bp)
GTGCCTTGTTGTTAGCATCAATTGT
LOC_Os01g40320
Os.54352.1.S1_at--57--131Chr01:23083892..23083916 (25 bp)
ATTCATAATGGCTACTGTTGTTCAG
LOC_Os01g40320
Os.54352.1.S1_at--995--2811Chr01:23083944..23083968 (25 bp)
AAGTTAGAATTTGTCCTGGCAGATC
LOC_Os01g40320
Os.54352.1.S1_at--388--7251Chr01:23083956..23083980 (25 bp)
GTCCTGGCAGATCAACTGGTTACAT
LOC_Os01g40320
Os.54352.1.S1_at--18--10391Chr01:23084012..23084036 (25 bp)
TTTTCTTTCCTTACCAGCCTATGCT
LOC_Os01g40320
Os.54352.1.S1_at--97--9291Chr01:23084078..23084102 (25 bp)
TCCGTCCATGTGTAAGTTTGTACTC
LOC_Os01g40320
Os.54352.1.S1_at--174--6871Chr01:23084093..23084117 (25 bp)
GTTTGTACTCTGTTTCTACAGCTAA
LOC_Os01g40320
Target Sequence 
TCGACCTCTCGAAATTTACCCGTATTGAGATTGGAGTATCTGCTTACTCATCAGGGTCTTCAGGTCAGACAGATTTGCCT
CGACCAGAATATGTTCCTTCTGTTTGAACCTATCTATTATTATGGACAGCAAATAACTGTGCCTTGTTGTTAGCATCAAT
TGTTGAAAAGGTGTTTTTTAAGGTTATTCATAATGGCTACTGTTGTTCAGATAAATGCTGATATACTTTTAGTTGACAAG
TTAGAATTTGTCCTGGCAGATCAACTGGTTACATGATATTCTTACAACTATAACTCTGTAAGACCTTTTCTTTCCTTACC
AGCCTATGCTTGATGCACCTGTGTATGGTAGAATTGCAACAATTGAGCTCTTCCGTCCATGTGTAAGTTTGTACTCTGTT
TCTACAGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis