Browse Element(s) Details


Os.54355.1.S1_at

Description gb:AK103606.1
DB_XREF= gi:32988815
TID=Os.54355.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133H08, full insert sequence.
FL= gb:AK103606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1087011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10830OsAffx.19601.1.S1_at1/1112+5828930..5842420retrotransposon protein, putative, unclassified
LOC_Os12g10840OsAffx.31690.1.S1_at11/1112+5846573..5846888hypothetical protein
LOC_Os12g10850OsAffx.19602.1.S1_at11/1112+5848741..5851370A/G-specific adenine glycosylase family protein
LOC_Os12g10859NANA12+5852972..5853344NA
LOC_Os12g10870Os.54355.1.S1_at11/1112+5855199..5858246Leucine Rich Repeat family protein, expressed
LOC_Os12g10880OsAffx.19603.1.S1_at9/1112+5865022..5865882hypothetical protein
LOC_Os12g10890OsAffx.442.1.S1_x_at6/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.2.S1_s_at6/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.4.S1_at4/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.4.S1_x_at3/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.1.S1_x_at3/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.442.1.S1_at3/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.1.S1_at2/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.24587.1.S1_x_at2/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.2.S1_x_at1/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54355.1.S1_at--485--7271Chr12:5855805..5855829 (25 bp)
GTCCATGATTGCCATGACTCAAAAT
LOC_Os12g10870
Os.54355.1.S1_at--805--7571Chr12:5855612..5855636 (25 bp)
GGGCTTGTACTGCTTCACGGGCTCA
LOC_Os12g10870
Os.54355.1.S1_at--1003--5831Chr12:5855516..5855540 (25 bp)
GACCTCTCCTCGAATGAGCTCACTG
LOC_Os12g10870
Os.54355.1.S1_at--225--211Chr12:5855443..5855467 (25 bp)
ATTTGTCCTACAACATGTTGGTTGG
LOC_Os12g10870
Os.54355.1.S1_at--140--2511Chr12:5855363..5855387 (25 bp)
AACATTGGTTTGTGTGGACCACCGT
LOC_Os12g10870
Os.54355.1.S1_at--526--8091Chr12:5855348..5855372 (25 bp)
GGACCACCGTTATCCAAACAATGTG
LOC_Os12g10870
Os.54355.1.S1_at--984--8671Chr12:5855327..5855351 (25 bp)
TGTGACAACCCAAAAGAGCCCATTG
LOC_Os12g10870
Os.54355.1.S1_at--890--2771Chr12:5855314..5855338 (25 bp)
AAGAGCCCATTGTTATGACATACAC
LOC_Os12g10870
Os.54355.1.S1_at--783--6771Chr12:5855303..5855327 (25 bp)
GTTATGACATACACTTCGGAGAAAT
LOC_Os12g10870
Os.54355.1.S1_at--365--3651Chr12:5855290..5855314 (25 bp)
CTTCGGAGAAATCCACAGATGTTGT
LOC_Os12g10870
Os.54355.1.S1_at--92--6531Chr12:5855242..5855266 (25 bp)
GATTTGGTGTTTCCTATGCAATGAC
LOC_Os12g10870
Target Sequence 
GTCCATGATTGCCATGACTCAAAATGATACACTAGTCATGGAAAATAAATATTACCATGGGCAAACATACCAGTTTACTG
CCTCAGTTACATACAAAGGGAGTGACANGACAATTTCCAAGATATTGAGGACCCTTATGCTGATTGATTTCTCAAATAAT
GCATTNNCATGGTACCATTCCTGAGACTGTCGGGGGGCTTGTACTGCTTCACGGGCTCAACATGTCTCACAATNCNCNNA
NAGGATCAATTCCAACTCAGTTTGGCAGGTTGAATCAACTTGAGTCATTGGACCTCTCCTCGAATGAGCTCACTGGGGGG
ATCCCCAAGGAGCTAGCATCACTCAACTTCCTTTCAACACTGAATTTGTCCTACAACATGTTGGTTGGAAGAATACCAAA
CTCATATCAGTTTTCCACCTTTTCCAACAATTCTTTTCTTGGAAACATTGGTTTGTGTGGACCACCGTTATCCAAACAAT
GTGACAACCCAAAAGAGCCCATTGTTATGACATACACTTCGGAGAAATCCACAGATGTTGTACTAGTCCTCTTCACTGCA
TTGGGATTTGGTGTTTCCTATGCAATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis