Browse Element(s) Details


Os.54395.1.S1_at

Description gb:AK103886.1
DB_XREF= gi:32989095
TID=Os.54395.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150C08, full insert sequence.
FL= gb:AK103886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3774011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37710Os.50984.1.S1_s_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37710Os.52297.1.S1_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37720Os.26814.1.S1_x_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37720Os.26814.2.S1_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37730NANA12+23131370..23131983hypothetical protein
LOC_Os12g37740Os.54395.1.S1_at11/1112+23133627..23138411NB-ARC domain containing protein, expressed
LOC_Os12g37750Os.50330.1.S1_at10/1112+23139638..23142379expressed protein
LOC_Os12g37760Os.52230.1.S1_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.52230.1.S2_at11/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37760Os.32832.1.S1_a_at1/1112+23149023..23154960NB-ARC domain containing protein, expressed
LOC_Os12g37770OsAffx.32073.1.S1_at11/1112+23157174..23162441NB-ARC domain containing protein, expressed
LOC_Os12g37780Os.53693.1.S1_at11/1112+23162951..23167245calmodulin-binding protein MPCBP, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54395.1.S1_at--263--2071Chr12:23134169..23134193 (25 bp)
ACATTCCAAATTCTTGCGGGCTTGC
LOC_Os12g37740
Os.54395.1.S1_at--283--7591Chr12:23134152..23134176 (25 bp)
GGGCTTGCCGTCTTTAATATTTCTT
LOC_Os12g37740
Os.54395.1.S1_at--302--10251Chr12:23134129..23134153 (25 bp)
TTTGGATATCCTCTAGAGCAGCAAC
LOC_Os12g37740
Os.54395.1.S1_at--343--10691Chr12:23134070..23134094 (25 bp)
TTCCAGTGTCTGAGGGAGCTCTACT
LOC_Os12g37740
Os.54395.1.S1_at--1109--5851Chr12:23134055..23134079 (25 bp)
GAGCTCTACTTCACCTGTTGGGAAA
LOC_Os12g37740
Os.54395.1.S1_at--905--2331Chr12:23133984..23134008 (25 bp)
AAAGCTTCGGGTTCCATATAATGCA
LOC_Os12g37740
Os.54395.1.S1_at--376--8791Chr12:23133908..23133932 (25 bp)
TGTTCCCTGAAACATCTCCATGTTG
LOC_Os12g37740
Os.54395.1.S1_at--337--731Chr12:23133889..23133913 (25 bp)
ATGTTGAGATTATTTGCCGTGGTGC
LOC_Os12g37740
Os.54395.1.S1_at--667--631Chr12:23133835..23133859 (25 bp)
ATGCTATCAAAAGCGCAGCTGGCCT
LOC_Os12g37740
Os.54395.1.S1_at--118--9251Chr12:23133811..23133835 (25 bp)
TCCTTTCTGATGAGCTCACTTTTGA
LOC_Os12g37740
Os.54395.1.S1_at--875--771Chr12:23133629..23133653 (25 bp)
ATGGGTAATGCGTTTTGGTCGTCTT
LOC_Os12g37740
Target Sequence 
ACATTCCAAATTCTTGCGGGCTTGCCGTCTTTAATATTTCTTTGGATATCCTCTAGAGCAGCAACCCCTAAAAAAGGGTT
AATTATCAGCTATAATGGGTTCCAGTGTCTGAGGGAGCTCTACTTCACCTGTTGGGAAAGCAAGACAGGTATGATGTTTG
AAGCAGGAGCCATGCCAAAACTTGAAAAGCTTCGGGTTCCATATAATGCATGTGATATATGCTCTTTGAATGGTGGTATG
GATTTTGGCATCCAACACCTCTGTTCCCTGAAACATCTCCATGTTGAGATTATTTGCCGTGGTGCAAAGCTTCAGGAGGT
GGAGGCCTTGGAGAATGCTATCAAAAGCGCAGCTGGCCTCCTTTCTGATGAGCTCACTTTTGAAGTAAGTAGATGGGATG
AAGAAGAGATTATTGATATGGACCAAGAACTGGCAGAAGATGATTTTGATACAATTAATTGAAAGCATAGCACAATACTG
AGGTATATTATTTGTTCTGTTAAGCCACAATTTGACATATTTTTATTATTAAATTTTATGGGTAATGCGTTTTGGTCGTC
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis