Browse Element(s) Details


Os.54415.1.S1_at

Description gb:AK105120.1
DB_XREF= gi:32990329
TID=Os.54415.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B07, full insert sequence.
FL= gb:AK105120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5017611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50160NANA4+29693227..29699382retrotransposon protein, putative, unclassified
LOC_Os04g50164NANA4+29708228..29709802retrotransposon protein, putative, unclassified
LOC_Os04g50168NANA4+29711954..29713625retrotransposon protein, putative, unclassified
LOC_Os04g50172Os.27544.1.A1_at4/114+29714175..29718815retrotransposon protein, putative, unclassified
LOC_Os04g50172OsAffx.10711.1.S1_x_at3/114+29714175..29718815retrotransposon protein, putative, unclassified
LOC_Os04g50176Os.54415.1.S1_at11/114+29719823..29720862expressed protein
LOC_Os04g50180OsAffx.14355.1.S1_at11/114+29722165..29722883hypothetical protein
LOC_Os04g50180OsAffx.11861.1.S1_x_at1/114+29722165..29722883hypothetical protein
LOC_Os04g50184OsAffx.26547.1.S1_at11/114+29725003..29725404hypothetical protein
LOC_Os04g50188OsAffx.26548.1.S1_at11/114+29726865..29727200hypothetical protein
LOC_Os04g50192OsAffx.25036.1.S1_at11/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50192OsAffx.25036.2.S1_at4/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50196OsAffx.26549.1.S1_at11/114+29734667..29734984hypothetical protein
LOC_Os04g50200OsAffx.26550.1.S1_at11/114+29739017..29740549F-box protein interaction domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54415.1.S1_at--955--6031Chr04:29720528..29720552 (25 bp)
GAGATCGCCCGATCGGCGCGTGAAT
LOC_Os04g50176
Os.54415.1.S1_at--303--3031Chr04:29720550..29720574 (25 bp)
AATGCGTGATCATTCCGGGCGATTT
LOC_Os04g50176
Os.54415.1.S1_at--841--91Chr04:29720561..29720585 (25 bp)
ATTCCGGGCGATTTTCGCAGCAGCG
LOC_Os04g50176
Os.54415.1.S1_at--1118--3391Chr04:29720578..29720602 (25 bp)
CAGCAGCGTGGAGGATCTAATCATC
LOC_Os04g50176
Os.54415.1.S1_at--456--431Chr04:29720606..29720630 (25 bp)
ATCATTCGGTTGGTGCTTTCTGTGC
LOC_Os04g50176
Os.54415.1.S1_at--272--8691Chr04:29720626..29720650 (25 bp)
TGTGCGCTTACGATGCCGTTAATTA
LOC_Os04g50176
Os.54415.1.S1_at--1100--3871Chr04:29720686..29720710 (25 bp)
CTGTAATCTGAGGATCCGAGCTGAT
LOC_Os04g50176
Os.54415.1.S1_at--1010--6051Chr04:29720750..29720774 (25 bp)
GAGTTCATTAGCGTTCACAATGGGT
LOC_Os04g50176
Os.54415.1.S1_at--808--2491Chr04:29720792..29720816 (25 bp)
AACAGGCTGTTTTGATCTTTTGTAA
LOC_Os04g50176
Os.54415.1.S1_at--364--7071Chr04:29720813..29720837 (25 bp)
GTAATCCGATGACGCGTTGGTGTTC
LOC_Os04g50176
Os.54415.1.S1_at--1145--8611Chr04:29720830..29720854 (25 bp)
TGGTGTTCTTGGCAATGTCCCTCAA
LOC_Os04g50176
Target Sequence 
GAGATCGCCCGATCGGCGCGTGAATGCGTGATCATTCCGGGCGATTTTCGCAGCAGCGTGGAGGATCTAATCATCATCAT
CATTCGGTTGGTGCTTTCTGTGCGCTTACGATGCCGTTAATTAATTTGCTGATTAAATCTGTTTGTCCCCCCCCCCCCCT
GTAATCTGAGGATCCGAGCTGATTTTGGTGTCACAAGAAAAGAGGGTGTAAATATTTGATGTGAGTTCATTAGCGTTCAC
AATGGGTGATTGGGTGTTCTAATAAACAGGCTGTTTTGATCTTTTGTAATCCGATGACGCGTTGGTGTTCTTGGCAATGT
CCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis