Browse Element(s) Details


Os.54439.1.S1_at

Description gb:AK105166.1
DB_XREF= gi:32990375
TID=Os.54439.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-E10, full insert sequence.
FL= gb:AK105166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4187010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41840Os.38395.3.S1_x_at11/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.2.S1_x_at9/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.4.S1_x_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.1.S1_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.5.S1_at2/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41850Os.17377.1.S1_at11/114+24576568..24582653RWP-RK domain containing protein, expressed
LOC_Os04g41860Os.51201.1.S1_at11/114+24587090..24588139expressed protein
LOC_Os04g41860Os.51201.1.S1_x_at11/114+24587090..24588139expressed protein
LOC_Os04g41870Os.54439.1.S1_at10/114+24591237..24592046expressed protein
LOC_Os04g41880OsAffx.14234.1.S1_at11/114+24602933..24604198transposon protein, putative, unclassified
LOC_Os04g41890OsAffx.26422.1.S1_at11/114+24606435..24608528hypothetical protein
LOC_Os04g41900Os.11538.1.S1_at11/114+24611283..24612280expressed protein
LOC_Os04g41900Os.24023.1.A1_x_at1/114+24611283..24612280expressed protein
LOC_Os04g41910Os.24827.1.S1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41910Os.24053.1.A1_at11/114+24615322..24620689RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54439.1.S1_at--359--7311Chr04:24591399..24591423 (25 bp)
GTGCGGTTTGTAATTGTGCGGACAA
LOC_Os04g41870
Os.54439.1.S1_at--1046--9731Chr04:24591389..24591413 (25 bp)
TAATTGTGCGGACAAGCGCCTCGCG
LOC_Os04g41870
Os.54439.1.S1_at--1143--8691Chr04:24591352..24591376 (25 bp)
TGTGCCGCGCGGTCTCAGCAACGAG
LOC_Os04g41870
Os.54439.1.S1_at--889--4671Chr04:24591344..24591368 (25 bp)
GCGGTCTCAGCAACGAGCTCAATTA
LOC_Os04g41870
Os.54439.1.S1_at--959--5151Chr04:24591335..24591359 (25 bp)
GCAACGAGCTCAATTACTGTGTATA
LOC_Os04g41870
Os.54439.1.S1_at--564--9871Chr04:24591312..24591336 (25 bp)
TACTTAGTAGGTGTGTGACCGTCCA
LOC_Os04g41870
Os.54439.1.S1_at--860--7371Chr04:24591298..24591322 (25 bp)
GTGACCGTCCAGCTGAATATATGTT
LOC_Os04g41870
Os.54439.1.S1_at--348--6751Chr04:24591276..24591300 (25 bp)
GTTCAGAATCAGATCCAACATTAGC
LOC_Os04g41870
Os.54439.1.S1_at--983--4371Chr04:24591262..24591286 (25 bp)
CCAACATTAGCAGAGCGAAATCGGT
LOC_Os04g41870
Os.54439.1.S1_at--131--1651Chr04:24591249..24591273 (25 bp)
AGCGAAATCGGTAGCGCGGCCGCTT
LOC_Os04g41870
Os.54439.1.S1_at--874--1651Chr04:24591237..24591261 (25 bp)
AGCGCGGCCGCTTTATTCTATCCTT
NONE
Target Sequence 
GTGCGGTTTGTAATTGTGCGGACAAGCGCCTCGCGCCCTCGCCGTCCTGTGCCGCGCGGTCTCAGCAACGAGCTCAATTA
CTGTGTATACTTAGTAGGTGTGTGACCGTCCAGCTGAATATATGTTCAGAATCAGATCCAACATTAGCAGAGCGAAATCG
GTAGCGCGGCCGCTTTATTCTATCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis