Browse Element(s) Details


Os.54488.1.S1_at

Description gb:AK105479.1
DB_XREF= gi:32990688
TID=Os.54488.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-A10, full insert sequence.
FL= gb:AK105479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2040010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20380NANA9+12239307..12242725transposon protein, putative, Mutator sub-class
LOC_Os09g20390OsAffx.17798.1.S1_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.1.A1_s_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.2.A1_at6/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20400Os.54488.2.S1_at11/119+12262315..12266429expressed protein
LOC_Os09g20400OsAffx.29937.1.S1_s_at11/119+12262315..12266429expressed protein
LOC_Os09g20400Os.54488.1.S1_at10/119+12262315..12266429expressed protein
LOC_Os09g20410OsAffx.29938.1.S1_at11/119+12278794..12279745hypothetical protein
LOC_Os09g20420OsAffx.7080.2.A1_at11/119+12283152..12284276hypothetical protein
LOC_Os09g20430Os.18154.1.S1_at10/119+12288982..12293954SCO1/SenC family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54488.1.S1_at--81--10191Chr09:12262426..12262450 (25 bp)
TTAAGCGGAGGATTAGGTTAATGAT
LOC_Os09g20400
Os.54488.1.S1_at--630--6071Chr09:12262398..12262422 (25 bp)
GAGTTTAACAAGTTGATCTGTACTG
LOC_Os09g20400
Os.54488.1.S1_at--244--3231Chr09:12262390..12262414 (25 bp)
CAAGTTGATCTGTACTGTTAGATGC
LOC_Os09g20400
Os.54488.1.S1_at--137--3851Chr09:12262376..12262400 (25 bp)
CTGTTAGATGCATGATCAGGTACTA
LOC_Os09g20400
Os.54488.1.S1_at--364--9051Chr09:12262368..12262392 (25 bp)
TGCATGATCAGGTACTAATGCTTGG
LOC_Os09g20400
Os.54488.1.S1_at--510--3731Chr09:12262354..12262378 (25 bp)
CTAATGCTTGGTCATAGTGTTTCTT
LOC_Os09g20400
Os.54488.1.S1_at--737--4931Chr09:12262349..12262373 (25 bp)
GCTTGGTCATAGTGTTTCTTGTTCT
LOC_Os09g20400
Os.54488.1.S1_at--45--7831Chr09:12262345..12262369 (25 bp)
GGTCATAGTGTTTCTTGTTCTGCTT
LOC_Os09g20400
Os.54488.1.S1_at--110--9611Chr09:12262343..12262367 (25 bp)
TCATAGTGTTTCTTGTTCTGCTTCT
LOC_Os09g20400
Os.54488.1.S1_at--1054--8791Chr09:12262330..12262354 (25 bp)
TGTTCTGCTTCTAATAATATTCATG
LOC_Os09g20400
Os.54488.1.S1_at--420--3111Chr09:12262315..12262339 (25 bp)
AATATTCATGAATCGGTGTTTAATT
NONE
Target Sequence 
TTAAGCGGAGGATTAGGTTAATGATATAGAGTTTAACAAGTTGATCTGTACTGTTAGATGCATGATCAGGTACTAATGCT
TGGTCATAGTGTTTCTTGTTCTGCTTCTAATAATATTCATGAATCGGTGTTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis