Browse Element(s) Details

Os.54529.1.S1_at

Description

gb:AK105530.1
DB_XREF= gi:32990739
TID=Os.54529.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G09, full insert sequence.
FL= gb:AK105530.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07474	10/11	TPR Domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07410	OsAffx.15298.1.S1_at	11/11	6	+	3563648..3564653	hypothetical protein
LOC_Os06g07420	NA	NA	6	+	3565182..3569068	retrotransposon protein, putative, unclassified
LOC_Os06g07430	OsAffx.15299.3.S1_at	11/11	6	+	3570552..3571235	F-box domain containing protein
LOC_Os06g07430	OsAffx.15299.3.S1_x_at	11/11	6	+	3570552..3571235	F-box domain containing protein
LOC_Os06g07430	OsAffx.22217.1.S1_x_at	2/11	6	+	3570552..3571235	F-box domain containing protein
LOC_Os06g07440	Os.43764.1.A1_at	7/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.2.S1_x_at	3/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.7.S1_x_at	3/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.3.S1_x_at	1/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07450	OsAffx.15299.2.S1_s_at	11/11	6	+	3579485..3580357	F-box protein interaction domain containing protein
LOC_Os06g07460	OsAffx.27492.1.S1_at	11/11	6	+	3581154..3582434	F-box domain containing protein, expressed
LOC_Os06g07470	Os.53563.1.S1_at	10/11	6	+	3584218..3587271	expressed protein
LOC_Os06g07474	Os.54529.1.S1_at	10/11	6	+	3587218..3594866	TPR Domain containing protein, expressed
LOC_Os06g07480	Os.27959.1.A1_at	11/11	6	+	3595002..3597292	CDK-activating kinase assembly factor MAT1 family protein, expressed
LOC_Os06g07490	Os.49296.1.S1_at	11/11	6	+	3597467..3604189	expressed protein
LOC_Os06g07500	NA	NA	6	+	3607449..3610769	retrotransposon protein, putative, unclassified
LOC_Os06g07510	NA	NA	6	+	3611417..3611752	retrotransposon protein, putative, unclassified
LOC_Os06g07520	OsAffx.22947.1.S1_x_at	11/11	6	+	3614983..3619557	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520	OsAffx.22947.3.S1_x_at	4/11	6	+	3614983..3619557	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520	OsAffx.22947.2.S1_x_at	4/11	6	+	3614983..3619557	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520	OsAffx.22947.5.S1_x_at	3/11	6	+	3614983..3619557	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54529.1.S1_at--880--571	1	Chr06:3588379..3588403 (25 bp)	GACTCTAGTCTTTATGTAGCACTGA	LOC_Os06g07474
Os.54529.1.S1_at--602--785	1	Chr06:3588352..3588376 (25 bp)	GGTATGGGACAGACATTGTTCTCAA	LOC_Os06g07474
Os.54529.1.S1_at--96--101	1	Chr06:3588325..3588349 (25 bp)	AGGTTGTTTCCTGAAGCCACAGTGT	LOC_Os06g07474
Os.54529.1.S1_at--976--99	1	Chr06:3588162..3588186 (25 bp)	AGGATCCACTTCTTGTGCTTGCATG	LOC_Os06g07474
Os.54529.1.S1_at--503--905	1	Chr06:3588131..3588155 (25 bp)	TGCAGGGCTTTCACGTATGCGGCAG	LOC_Os06g07474
Os.54529.1.S1_at--979--85	1	Chr06:3588004..3588028 (25 bp)	ATGGCGATCGAAAACCTCCAAAGAT	LOC_Os06g07474
Os.54529.1.S1_at--266--171	1	Chr06:3587931..3587955 (25 bp)	ACCAAGGATTGGTTGCTCTAGGAAG	LOC_Os06g07474
Os.54529.1.S1_at--773--621	1	Chr06:3587485..3587509 (25 bp)	GAGGCTGTCAAATTCGTGCAACGAG	LOC_Os06g07474
Os.54529.1.S1_at--569--259	1	Chr06:3587466..3587490 (25 bp)	AACGAGCGGTTGCTTATGATCCAAA	LOC_Os06g07474
Os.54529.1.S1_at--339--69	2	Chr06:3587338..3587362 (25 bp)	ATGACGTGTTCCATTCTTCGTTTTT	LOC_Os06g07474
Os.54529.1.S1_at--879--695	1	NONE	GTAGCATGTTCCATCAAATCTGTAG	NONE

Target Sequence

GACTCTAGTCTTTATGTAGCACTGATTGGTATGGGACAGACATTGTTCTCAAACAGGTTGTTTCCTGAAGCCACAGTGTG
TTTTGAACATGCTATACCAAAGATTGAAGAGCAGGATCCACTTCTTGTGCTTGCATGCTACGGTGCAGGGCTTTCACGTA
TGCGGCAGGGTGATAGCAAAATGGCGATCGAAAACCTCCAAAGATTAGCAGAGCTCAAGGAACCAGAAAAACCCATTAAC
AAAAAATGCTATTACCAAGGATTGGTTGCTCTAGGAAGTATACTAATTAATGAGGGACGGAAATCTGAGGCTGTCAAATT
CGTGCAACGAGCGGTTGCTTATGATCCAAATTGTGAGATATATCTGAAAGAATGTGATGACACAACAGAAGATAAGCCGA
AATCTGCAGAACACTGAATTGCCACAACTGAAGATCAGAGTCAGGCATCATGGATGACGTGTTCCATTCTTCGTTTTTTT
TTTTTTTTTACAAACAATACAATTTTGTGCGATTTGTACACATGTAGCATGTTCCATCAAATCTGTAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis