Browse Element(s) Details


Os.5457.1.S1_at

Description gb:AK069337.1
DB_XREF= gi:32979361
TID=Os.5457.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5457 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0707D10.18 (P0707D10.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014F07, full insert sequence.
FL= gb:AK104932.1 gb:AK069337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4575011/11bile acid transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein
LOC_Os01g45720Os.37905.1.S1_at7/111+26284555..26285416expressed protein
LOC_Os01g45730Os.30567.1.S1_at2/111+26286951..26288043Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os01g45740OsAffx.848.1.S1_at11/111+26297008..26299513retrotransposon protein, putative, unclassified
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45760Os.4680.1.S1_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45760Os.4680.2.S1_x_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45770OsAffx.23676.1.S1_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770OsAffx.23676.1.S1_s_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770Os.45912.1.S1_at4/111+26327296..26328079hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_s_at11/111+26330325..26331020hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_at10/111+26330325..26331020hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008508molecular_functionbile acid:sodium symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5457.1.S1_at--106--7611Chr01:26306103..26306127 (25 bp)
GGGAATCAACTTCTAGGACTATCTC
LOC_Os01g45750
Os.5457.1.S1_at--914--951Chr01:26306117..26306141 (25 bp)
AGGACTATCTCTATTGAATGCGGGA
LOC_Os01g45750
Os.5457.1.S1_at--409--5011Chr01:26306621..26306644 (24 bp)
GCAGAGTTCTGCACTTGGATTTTTA
LOC_Os01g45750
Os.5457.1.S1_at--814--7871Chr01:26306636..26306660 (25 bp)
GGATTTTTACTTGCCCAAAAGCACT
LOC_Os01g45750
Os.5457.1.S1_at--516--2431Chr01:26306652..26306676 (25 bp)
AAAAGCACTTCACGAATCCACTCGT
LOC_Os01g45750
Os.5457.1.S1_at--614--3031Chr01:26306666..26306690 (25 bp)
AATCCACTCGTAGCTGTTCCATCTG
LOC_Os01g45750
Os.5457.1.S1_at--296--8811Chr01:26306680..26306704 (25 bp)
TGTTCCATCTGCTGTCAGTGTTGTA
LOC_Os01g45750
Os.5457.1.S1_at--668--8731Chr01:26306692..26306713 (22 bp)
TGTCAGTGTTGTATGCATGGCGCTT
LOC_Os01g45750
Os.5457.1.S1_at--623--2491Chr01:26306873..26306897 (25 bp)
AACAGAGGGCTTCCAGCAAATGACA
LOC_Os01g45750
Os.5457.1.S1_at--739--2151Chr01:26306982..26307006 (25 bp)
ACAGCATTTTTCTTGTTACCCATAT
LOC_Os01g45750
Os.5457.1.S1_at--461--6651Chr01:26307015..26307039 (25 bp)
GTTGATTATCAGTAGGACTTGCCTA
LOC_Os01g45750
Target Sequence 
GGGAATCAACTTCTAGGACTATCTCTATTGAATGCGGGATGCAGAGTTCTGCACTTGGATTTTTACTTGCCCAAAAGCAC
TTCACGAATCCACTCGTAGCTGTTCCATCTGCTGTCAGTGTTGTATGCATGGCGCTTGGAGGGAGTGCTCTTGCAGTTTT
TTGGAGGAACAGAGGGCTTCCAGCAAATGACAAAGACGATTTCAAGGAATGAAACACCAACACCCTCCAGTTTNTAGTCA
TTACCTAGTGTTGTTTTTTAGTTCAGTGGAGTTATCACAGCATTTTTCTTGTTACCCATATTTTAGCAAGTTGATTATCA
GTAGGACTTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis