Browse Element(s) Details


Os.54571.2.A1_at

Description gb:AK105821.1
DB_XREF= gi:32991030
TID=Os.54571.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-D07, full insert sequence.
FL= gb:AK105821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2737011/11Phospholipase D alpha 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed
LOC_Os03g27360OsAffx.13073.1.S1_at11/113+15646987..15648240Zinc finger, C3HC4 type family protein
LOC_Os03g27370Os.54571.2.A1_at11/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27370Os.50043.1.A1_at1/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27380OsAffx.13074.1.S1_at11/113+15661467..15661676expressed protein
LOC_Os03g27390Os.28061.1.S1_at11/113+15664348..15668007expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0030136cellular_componentclathrin-coated vesicle
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54571.2.A1_at--853--1671Chr03:15656994..15657018 (25 bp)
AGCCGAGCCACCTGGCGTCGGTGAA
LOC_Os03g27370
Os.54571.2.A1_at--627--7391Chr03:15657137..15657161 (25 bp)
GTGAGGCTCGTGAACCAGGCGGCGC
LOC_Os03g27370
Os.54571.2.A1_at--432--1771Chr03:15657231..15657255 (25 bp)
ACCTGATGGCGTACCCGGTGCGCTG
LOC_Os03g27370
Os.54571.2.A1_at--926--9111Chr03:15657345..15657369 (25 bp)
TGCTGGGTGCCAAGTCTGACGTGCT
LOC_Os03g27370
Os.54571.2.A1_at--592--6171Chr03:15657390..15657414 (25 bp)
GAGGATGAGGAAGTCCCCATGCGTC
LOC_Os03g27370
Os.54571.2.A1_at--1035--8871Chr03:15657395..15657419 (25 bp)
TGAGGAAGTCCCCATGCGTCGTCAT
LOC_Os03g27370
Os.54571.2.A1_at--679--611Chr03:15657408..15657432 (25 bp)
ATGCGTCGTCATGCTGTGCTTGCTG
LOC_Os03g27370
Os.54571.2.A1_at--10--9411Chr03:15657413..15657437 (25 bp)
TCGTCATGCTGTGCTTGCTGAGTGC
LOC_Os03g27370
Os.54571.2.A1_at--1042--1111Chr03:15657433..15657457 (25 bp)
AGTGCAGAAATGTTCGTTTACGTGC
LOC_Os03g27370
Os.54571.2.A1_at--224--8731Chr03:15657443..15657467 (25 bp)
TGTTCGTTTACGTGCAATGCAAGGT
LOC_Os03g27370
Os.54571.2.A1_at--984--3191Chr03:15657457..15657481 (25 bp)
CAATGCAAGGTGGTTGTGAACTTAC
LOC_Os03g27370
Target Sequence 
AGCCGAGCCACCTGGCGTCGGTGAACCGGCCGGCGAGGGGCCAGGTGCACGGCTTCCGCCTCGCGCTGTGGCACGAGCAC
CTGGGCAGGGCGGCTGCGGCGTCGGCCGCCGGCGAACTCCTCCGGCCGTCGAGCCTGGCGAGCGTGAGGCTCGTGAACCA
GGCGGCGCGGCGCCACTGGGACGCGTTCGCGAGAGGCGACGGCGACGGCGCGCCGCCGACGGAAGACCTCCCGGGCCACC
TGATGGCGTACCCGGTGCGCTGGACGGGCTGCGGCGGCAGCGACGGCAGCGACGGCAGCGACGGCAAGCTCGTCGCGGCG
ACGGAGACGTTCCCGGACACCAAGGCGAAGGTGCTGGGTGCCAAGTCTGACGTGCTCCCGCCCATCCTCACCACATGAGG
ATGAGGAAGTCCCCATGCGTCGTCATGCTGTGCTTGCTGAGTGCAGAAATGTTCGTTTACGTGCAATGCAAGGTGGTTGT
GAACTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54571.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis