Browse Element(s) Details


Os.54627.1.S1_at

Description gb:AK106296.1
DB_XREF= gi:32991505
TID=Os.54627.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B11, full insert sequence.
FL= gb:AK106296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1904011/11expressed protein
LOC_Os05g288401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18990OsAffx.25136.1.S1_x_at11/113+10622599..10624308hypothetical protein
LOC_Os03g18990OsAffx.19217.1.S1_x_at1/113+10622599..10624308hypothetical protein
LOC_Os03g19000OsAffx.12931.1.S1_at11/113+10624831..10625595Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_s_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19020Os.8914.1.S1_at11/113+10630243..10634687PHD-finger family protein, expressed
LOC_Os03g19030OsAffx.15200.2.S1_x_at5/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.2.S1_at3/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.3.S1_s_at1/113+10640221..10640985hypothetical protein
LOC_Os03g19040Os.54627.1.S1_at11/113+10641421..10642485expressed protein
LOC_Os03g19050Os.35344.18.S1_x_at10/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050Os.35344.3.S1_x_at9/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_at5/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_x_at4/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19060NANA3+10652230..10655534hypothetical protein
LOC_Os03g19070Os.10091.1.S1_at11/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_s_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.2.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19080Os.8876.1.S1_at11/113+10663346..10667807expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54627.1.S1_at--91--811Chr03:10641666..10641690 (25 bp)
ATGGGATCCGCCTGGTGCTTCAGCG
LOC_Os03g19040
Os.54627.1.S1_at--1012--7772Chr03:10641679..10641703 (25 bp)
GGTGCTTCAGCGACCCGGAGATGAA
LOC_Os03g19040
Os.54627.1.S1_at--39--2871Chr03:10641795..10641819 (25 bp)
AAGTGCTCCGAGTTGATCCATGGCT
LOC_Os03g19040
Os.54627.1.S1_at--986--571Chr03:10641810..10642232 (25 bp)
ATCCATGGCTGAGCCGTGGGATCTT
LOC_Os03g19040
Os.54627.1.S1_at--1058--3411Chr03:10642242..10642266 (25 bp)
CAGTTTGGGTTGGAACACGATACAA
LOC_Os03g19040
Os.54627.1.S1_at--670--8031Chr03:10642285..10642309 (25 bp)
GGAGTGTACTCGCTACTACTAATTT
LOC_Os03g19040
Os.54627.1.S1_at--246--3891Chr03:10642323..10642347 (25 bp)
CGGAAGGATTTGTCCAAGAGACCGA
LOC_Os03g19040
Os.54627.1.S1_at--961--2371Chr03:10642391..10642415 (25 bp)
AAACTTGTTAGGAGCTTTCTGATGA
LOC_Os03g19040
Os.54627.1.S1_at--501--8871Chr03:10642410..10642434 (25 bp)
TGATGAGATTGCTTCTCTTGCCGAT
LOC_Os03g19040
Os.54627.1.S1_at--105--10711Chr03:10642427..10642451 (25 bp)
TTGCCGATGCTGTTGTTACTGTCTG
LOC_Os03g19040
Os.54627.1.S1_at--840--6771Chr03:10642441..10642465 (25 bp)
GTTACTGTCTGCTAATTCTAGCCTA
LOC_Os03g19040
Target Sequence 
ATGGGATCCGCCTGGTGCTTCAGCGACCCGGAGATGAAGAGGCGGCGGCGGGTGGCGAGCTACAAGGCGTACTCGGTGGA
GGGGAANGTCAAGTCCTCCCTCCGCAGGGGTTTCCGCTGGATCAAGGCCAAGTGCTCCGAGTTGATCCATGGCTGAGCCG
TGGGATCTTGGTGGAGTNCAGTTTGGGTTGGAACACGATACAANGCCTGCAACCATGTGCANGGAGTGTACTCGCTACTA
CTAATTTTCTGCCAAAAATGCGGAAGGATTTGTCCAAGAGACCGAGGGGAACTGTTCTTGGGTGGTCAGGTTATAGGAAA
GGAAAAGAAAACTTGTTAGGAGCTTTCTGATGAGATTGCTTCTCTTGCCGATGCTGTTGTTACTGTCTGCTAATTCTAGC
CTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis