Browse Element(s) Details


Os.54636.1.S1_at

Description gb:AK106332.1
DB_XREF= gi:32991541
TID=Os.54636.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54636 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-F09, full insert sequence.
FL= gb:AK106332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1330011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13260Os.4195.1.S1_at11/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_x_at7/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_at2/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13270Os.34829.1.S1_at11/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13270OsAffx.2666.1.S1_x_at1/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13280Os.3634.1.S1_a_at11/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13280Os.48021.1.S1_x_at3/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13300Os.54636.1.S1_at11/111+7414105..7419317B3 DNA binding domain containing protein, expressed
LOC_Os01g13310OsAffx.22073.1.S1_at11/111+7421086..7424444DNA topoisomerase 2, putative
LOC_Os01g13320Os.46008.1.S1_at4/111+7426186..7428137Pectinesterase family protein, expressed
LOC_Os01g13330NANA1+7428736..7429804hypothetical protein
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54636.1.S1_at--145--1611Chr01:7418654..7418678 (25 bp)
AGCTGAAGCTTGAGCGGTCTCGTGC
LOC_Os01g13300
Os.54636.1.S1_at--185--8191Chr01:7418777..7418801 (25 bp)
GGAACCATGACATTGCGCTGCGGAA
LOC_Os01g13300
Os.54636.1.S1_at--860--811Chr01:7418817..7418841 (25 bp)
ATGGTGATCCTGCTTGACATCTGGG
LOC_Os01g13300
Os.54636.1.S1_at--549--10231Chr01:7418859..7418883 (25 bp)
TTTGGGTTCGTCATTCAGGGTTTCA
LOC_Os01g13300
Os.54636.1.S1_at--266--651Chr01:7418903..7418927 (25 bp)
ATGCACTGGGAAACCTTCGTGGTGA
LOC_Os01g13300
Os.54636.1.S1_at--836--1091Chr01:7418935..7418959 (25 bp)
AGTGGTGAATCCTGCTAAACTCAAG
LOC_Os01g13300
Os.54636.1.S1_at--133--2091Chr01:7418980..7419004 (25 bp)
ACATTTCTTCAGTTACTACCACGCA
LOC_Os01g13300
Os.54636.1.S1_at--12--1851Chr01:7419000..7419024 (25 bp)
ACGCAGCTCAGTGCCTATCTAGAAC
LOC_Os01g13300
Os.54636.1.S1_at--427--8791Chr01:7419025..7419049 (25 bp)
TGTTCAGCAGCAAACCTGTCTAGGA
LOC_Os01g13300
Os.54636.1.S1_at--647--3471Chr01:7419052..7419076 (25 bp)
CAGGATGCTGTTTTTACACGGTAAA
LOC_Os01g13300
Os.54636.1.S1_at--751--10411Chr01:7419165..7419189 (25 bp)
TTATTTCAGACTCCGTCATTCAGTG
LOC_Os01g13300
Target Sequence 
AGCTGAAGCTTGAGCGGTCTCGTGCTGGGGAGAAGGTGGAGGCTCTGGAGTCCATGATGTTGACAGTGAAGGATGTGCTG
AAGAAGATCGATGCCGAGATGGAGGAGATGGAGTCGAGCGTGAGGAACCATGACATTGCGCTGCGGAAGATCGCCACTGC
GCCATGGTGATCCTGCTTGACATCTGGGGTACTTGTCTGAAACATTTTGGGTTCGTCATTCAGGGTTTCAGATGATGATG
ATGATGATGATGCACTGGGAAACCTTCGTGGTGAGTGACTGAGTGGTGAATCCTGCTAAACTCAAGGACTGACCACATTT
TTGTGTACATTTCTTCAGTTACTACCACGCAGCTCAGTGCCTATCTAGAACTGTTCAGCAGCAAACCTGTCTAGGAATCA
GGATGCTGTTTTTACACGGTAAATCGTATAACAGAAGTTGTAAATTTTGGGGGGCGAATGCGCTGTAAGCAGTGCAGGAA
ATGCGAGGAAGAAATGCAGAACACTACTTAATTATTTCAGACTCCGTCATTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis