Browse Element(s) Details


Os.54669.1.S1_at

Description gb:AK106436.1
DB_XREF= gi:32991645
TID=Os.54669.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D02, full insert sequence.
FL= gb:AK106436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5030011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50270Os.53593.1.S1_at11/115+28734333..28735599GATA zinc finger family protein, expressed
LOC_Os05g50280Os.2310.1.S1_at11/115+28736171..28741057Sugar transporter family protein, expressed
LOC_Os05g50290OsAffx.27392.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50290Os.2301.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50300Os.54669.1.S1_at11/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50300OsAffx.4322.1.S1_x_at2/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50310Os.57347.1.S1_at11/115+28752502..28753597ZF-HD protein dimerisation region containing protein, expressed
LOC_Os05g50320OsAffx.27393.1.S1_at11/115+28754132..28754375hypothetical protein
LOC_Os05g50330Os.50510.1.S1_at10/115+28755137..28757443expressed protein
LOC_Os05g50330OsAffx.31487.1.S1_at3/115+28755137..28757443expressed protein
LOC_Os05g50340OsAffx.15178.1.S1_s_at11/115+28761815..28762852RADIALIS, putative, expressed
LOC_Os05g50350NANA5+28765219..28767070myb family transcription factor, putative
LOC_Os05g50360Os.2307.1.S1_at10/115+28771550..28774546Anaphase promoting complex subunit 10, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54669.1.S1_at--322--4711Chr05:28748387..28748411 (25 bp)
GCGGCGACCACAAGGATATCTGCGA
LOC_Os05g50300
Os.54669.1.S1_at--188--4491Chr05:28748542..28748566 (25 bp)
GCCGGGAAGCTTCCAATTCTCTTGG
LOC_Os05g50300
Os.54669.1.S1_at--528--10571Chr05:28748558..28748582 (25 bp)
TTCTCTTGGAAGCACGGTATGACGG
LOC_Os05g50300
Os.54669.1.S1_at--986--2851Chr05:28748635..28748659 (25 bp)
AAGTGTCCTGGCATGGATGCGGCTT
LOC_Os05g50300
Os.54669.1.S1_at--948--10431Chr05:28748658..28748682 (25 bp)
TTATGGGAGTGCAAGCCGCCGTCTG
LOC_Os05g50300
Os.54669.1.S1_at--1067--5011Chr05:28748688..28748712 (25 bp)
GCAGTCGTTTCTTTGAGTGAACATC
LOC_Os05g50300
Os.54669.1.S1_at--784--1111Chr05:28748703..28748727 (25 bp)
AGTGAACATCAGTGTTGGCTCTTGG
LOC_Os05g50300
Os.54669.1.S1_at--470--9231Chr05:28748738..28748762 (25 bp)
TCCTACTTGGGCATCCTTAATGATT
LOC_Os05g50300
Os.54669.1.S1_at--673--6531Chr05:28748759..28748783 (25 bp)
GATTTAGGCCCATATCGACCATAAG
LOC_Os05g50300
Os.54669.1.S1_at--1054--731Chr05:28748812..28748836 (25 bp)
ATGTTACTGTGTTTTGGATCTCGTC
LOC_Os05g50300
Os.54669.1.S1_at--949--6411Chr05:28748828..28748852 (25 bp)
GATCTCGTCTTTACCTTGAGCTTAG
LOC_Os05g50300
Target Sequence 
GCGGCGACCACAAGGATATCTGCGAGGGCATAAAGCGAGCAGTGTGGGAAGAGGAAGGTGTGAGGGTTGGCTGGATCGTG
TTGGTCGACAGCGGCGTCGTGCCGAAGACAACGTCGGGGAAGCTCCGCCGCGGGGCGGCGAGAGAGAAGCTGCTCGCCGG
GAAGCTTCCAATTCTCTTGGAAGCACGGTATGACGGAGATGAGAGCTCGAGCTCGGTGCCATGGGACGGTGGCGAAGAGG
AGATGGAGAAGTGTCCTGGCATGGATGCGGCTTATGGGAGTGCAAGCCGCCGTCTGCGTCTGCAGTCGTTTCTTTGAGTG
AACATCAGTGTTGGCTCTTGGCTCCAAGCCTTCCTACTTGGGCATCCTTAATGATTTAGGCCCATATCGACCATAAGTGG
GATGCAATCATTTTATTCATGGCAAATGTTACTGTGTTTTGGATCTCGTCTTTACCTTGAGCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis