Browse Element(s) Details


Os.54671.1.S1_at

Description gb:AK106439.1
DB_XREF= gi:32991648
TID=Os.54671.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D08, full insert sequence.
FL= gb:AK106439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1750011/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17450OsAffx.13772.1.S1_x_at1/118+10685821..10689675hypothetical protein
LOC_Os08g17450OsAffx.31069.1.S1_x_at1/118+10685821..10689675hypothetical protein
LOC_Os08g17460NANA8+10690418..10691465retrotransposon protein, putative, unclassified
LOC_Os08g17470NANA8+10692171..10694331retrotransposon protein, putative, unclassified
LOC_Os08g17480OsAffx.18275.1.S1_x_at1/118+10696536..10703008retrotransposon protein, putative, unclassified
LOC_Os08g17480OsAffx.22699.1.S1_x_at1/118+10696536..10703008retrotransposon protein, putative, unclassified
LOC_Os08g17490NANA8+10703824..10706786hypothetical protein
LOC_Os08g17500Os.54671.1.S1_at11/118+10712239..10714449NmrA-like family protein, expressed
LOC_Os08g17510OsAffx.5856.1.S1_at10/118+10716970..10718323Sulfotransferase domain containing protein, expressed
LOC_Os08g17520OsAffx.17047.1.S1_at11/118+10719419..10720402Flavonol sulfotransferase, putative, expressed
LOC_Os08g17530NANA8+10723539..10724003hypothetical protein
LOC_Os08g17540NANA8+10725180..10725822hypothetical protein
LOC_Os08g17544OsAffx.31844.1.S1_at1/118+10729375..10730390NA
LOC_Os08g17544OsAffx.17914.1.S1_x_at1/118+10729375..10730390NA
LOC_Os08g17550OsAffx.12322.1.S1_at1/118+10732950..10735261retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17560OsAffx.29252.1.S1_at11/118+10736795..10738309hypothetical protein
LOC_Os08g17570NANA8+10738728..10742979retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54671.1.S1_at--540--4611Chr08:10714116..10714140 (25 bp)
GCGAGCCAGTGCCTGTACGACACCG
LOC_Os08g17500
Os.54671.1.S1_at--815--931Chr08:10714153..10714177 (25 bp)
AGGACAAGGGCCTGCTTCCCTTCGT
LOC_Os08g17500
Os.54671.1.S1_at--544--3531Chr08:10714190..10714214 (25 bp)
CATGCCGTGAGCTAGCGATCGCCGG
LOC_Os08g17500
Os.54671.1.S1_at--364--4871Chr08:10714221..10714245 (25 bp)
GCTTTTGTTTTACATACCGCTCCGG
LOC_Os08g17500
Os.54671.1.S1_at--769--8451Chr08:10714284..10714308 (25 bp)
TGGCCTGCGTGCGTACGTGCCTGTA
LOC_Os08g17500
Os.54671.1.S1_at--250--4011Chr08:10714299..10714323 (25 bp)
CGTGCCTGTATGTTCGTCGGAAGAT
LOC_Os08g17500
Os.54671.1.S1_at--564--2191Chr08:10714334..10714358 (25 bp)
ACAACTGTATTTCTCCTAAGGGCCG
LOC_Os08g17500
Os.54671.1.S1_at--585--7791Chr08:10714358..10714382 (25 bp)
GGTCCTTTTCGGAGCACCTATAAAT
LOC_Os08g17500
Os.54671.1.S1_at--712--5931Chr08:10714369..10714393 (25 bp)
GAGCACCTATAAATCGGGCACCGAT
LOC_Os08g17500
Os.54671.1.S1_at--338--9431Chr08:10714382..10714406 (25 bp)
TCGGGCACCGATTAGTTTGTCAAAA
LOC_Os08g17500
Os.54671.1.S1_at--144--3091Chr08:10714406..10714430 (25 bp)
AATAGCGTGCTGTTTCACTAATTAA
LOC_Os08g17500
Target Sequence 
GCGAGCCAGTGCCTGTACGACACCGTCGTCAGCCTCCAGGACAAGGGCCTGCTTCCCTTCGTCCCTGCCGCCGCCATGCC
GTGAGCTAGCGATCGCCGGCGCGCCGCTTTTGTTTTACATACCGCTCCGGCCGGCCGATGATGACCACGGCGACGTGTCG
CCACCGGCTGGCCTGCGTGCGTACGTGCCTGTATGTTCGTCGGAAGATCAGAAGTTGTACAACTGTATTTCTCCTAAGGG
CCGGTCCTTTTCGGAGCACCTATAAATCGGGCACCGATTAGTTTGTCAAAAATAGCGTGCTGTTTCACTAATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis