Browse Element(s) Details


Os.54722.1.S1_at

Description gb:AK106593.1
DB_XREF= gi:32991802
TID=Os.54722.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-H05, full insert sequence.
FL= gb:AK106593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3371010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33680Os.23201.1.S1_at11/117+20125344..20127139succinate dehydrogenase subunit 3, putative, expressed
LOC_Os07g33690Os.57049.1.S1_at11/117+20127954..20133545NB-ARC domain containing protein, expressed
LOC_Os07g33700Os.35344.3.S1_x_at10/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700Os.35344.18.S1_x_at9/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700OsAffx.22940.5.S1_x_at3/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33710Os.54722.1.S1_at10/117+20147693..20151093expressed protein
LOC_Os07g33720OsAffx.16542.1.S1_at10/117+20156217..20160968NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.2.S1_x_at11/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33730Os.49914.1.S1_at10/117+20162557..20168467NB-ARC domain containing protein, expressed
LOC_Os07g33740OsAffx.5518.1.S1_at11/117+20172445..20175557NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54722.1.S1_at--125--1611Chr07:20149756..20149780 (25 bp)
AGCTGCAGATTCTCCAGACGTGGAC
LOC_Os07g33710
Os.54722.1.S1_at--609--1391Chr07:20149745..20149765 (21 bp)
AGACGTGGACTCATTTTCTGTTTCA
LOC_Os07g33710
Os.54722.1.S1_at--515--6831Chr07:20149635..20149657 (23 bp)
GTTTCACGATTCACATGCTCTGGTA
LOC_Os07g33710
Os.54722.1.S1_at--397--5611Chr07:20149579..20149603 (25 bp)
GACAATGCTTTTGCTTTCGGCATCA
LOC_Os07g33710
Os.54722.1.S1_at--384--1651NONE
AGCGCACTTGAGCATGTCCTTGTAA
NONE
Os.54722.1.S1_at--540--3251Chr07:20147932..20147956 (25 bp)
CAACCAGTTGGTTACTTCATCGATA
LOC_Os07g33710
Os.54722.1.S1_at--711--511Chr07:20147896..20147920 (25 bp)
ATCGATGTAGCCTGGAGACTCTGCA
LOC_Os07g33710
Os.54722.1.S1_at--1002--7491Chr07:20147853..20147877 (25 bp)
GTGGTCTTTACTCTTGTTCATTAAT
LOC_Os07g33710
Os.54722.1.S1_at--205--2671Chr07:20147792..20147816 (25 bp)
AAGCCGGTTAGAGATTGCAGCATAA
LOC_Os07g33710
Os.54722.1.S1_at--638--10271Chr07:20147750..20147774 (25 bp)
TTTGCACTTCTTTCGTGGGACCGCA
LOC_Os07g33710
Os.54722.1.S1_at--851--7631Chr07:20147734..20147758 (25 bp)
GGGACCGCACTTTAATCTGTACTAC
LOC_Os07g33710
Target Sequence 
AGCTGCAGATTCTCCAGACGTGGACTCATTTTCTGTTTCACGATTCACATGCTCTGGTAAAGGAAATTTTGCATCTAAAT
CAAGAGTCAAGACAATGCTTTTGCTTTCGGCATCATCTATCTGCCCAGCGCACTTGAGCATGTCCTTGTAAACGCATGGT
AACACTTAATTTGATGGAGCTGTTTCCTCCATGAAGAAGCTGTTATTTTCCTATGAATATCTCATCAGGTTAACAGGTTT
CTTGCAAGTTCAGAACAAGAAAGTTGCCTGAGATGATGCAAACTGACTGCACAAACAGAAAGGCAACCAGTTGGTTACTT
CATCGATATTACAGGCTAGATCGATGTAGCCTGGAGACTCTGCAAGTATGCATAGAAACAGAGTGGTCTTTACTCTTGTT
CATTAATCAGGATAGCCTTGCTGATGCTGAAGCAGCAAAACGGAAGCCGGTTAGAGATTGCAGCATAAATTGGATTCAGT
AATGCTTTGCACTTCTTTCGTGGGACCGCACTTTAATCTGTACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis