Browse Element(s) Details


Os.54749.1.S1_at

Description gb:AK109328.1
DB_XREF= gi:32994537
TID=Os.54749.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H11, full insert sequence.
FL= gb:AK109328.1 gb:AK106657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1986011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19800NANA3+11125162..11126244hypothetical protein
LOC_Os03g19810OsAffx.3278.1.S1_at11/113+11132765..11134146hypothetical protein
LOC_Os03g19820OsAffx.25151.1.S1_at11/113+11135454..11135837hypothetical protein
LOC_Os03g19830OsAffx.12945.1.S1_at11/113+11137208..11137672hypothetical protein
LOC_Os03g19840Os.28566.1.S1_at11/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.27455.2.S1_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.47130.4.A1_x_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19850OsAffx.25152.1.S1_at11/113+11147034..11147501expressed protein
LOC_Os03g19860Os.54749.1.S2_at11/113+11148696..11150211expressed protein
LOC_Os03g19860Os.54749.1.S1_at11/113+11148696..11150211expressed protein
LOC_Os03g19870Os.14774.1.S1_s_at11/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19870Os.14774.2.S1_at10/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19880OsAffx.12947.1.S1_at11/113+11157118..11157489hypothetical protein
LOC_Os03g19890Os.12831.1.S1_at10/113+11159816..11162760ETC complex I subunit conserved region family protein, expressed
LOC_Os03g19900Os.56314.1.S1_at4/113+11163340..11168139AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54749.1.S1_at--311--4491Chr03:11149355..11149379 (25 bp)
GCCGTTGACGCTTGCCCCGTTTGCG
LOC_Os03g19860
Os.54749.1.S1_at--121--9251Chr03:11149410..11149434 (25 bp)
TCCTTTCCTGAAGTCACTCACATGT
LOC_Os03g19860
Os.54749.1.S1_at--992--2833Chr03:11149420..11149444 (25 bp)
AAGTCACTCACATGTGCCACACCAG
LOC_Os03g19860
Os.54749.1.S1_at--930--6073Chr03:11149455..11149479 (25 bp)
GAGTAGGAGATTTCGATAGCGCAAC
LOC_Os03g19860
Os.54749.1.S1_at--1007--6471Chr03:11149469..11149493 (25 bp)
GATAGCGCAACAGCTGTGGCCAGAC
LOC_Os03g19860
Os.54749.1.S1_at--22--8671Chr03:11149483..11149507 (25 bp)
TGTGGCCAGACCGAAACCAGGCATC
LOC_Os03g19860
Os.54749.1.S1_at--665--5551Chr03:11149495..11149519 (25 bp)
GAAACCAGGCATCCGTCAGCCAACT
LOC_Os03g19860
Os.54749.1.S1_at--1104--4374Chr03:11149513..11149537 (25 bp)
GCCAACTCCGGTGTCAAGCAAGCTA
LOC_Os03g19860
Os.54749.1.S1_at--401--2554Chr03:11149516..11149540 (25 bp)
AACTCCGGTGTCAAGCAAGCTAACA
LOC_Os03g19860
Os.54749.1.S1_at--540--8155Chr03:11149566..11149590 (25 bp)
GGAAATTCATGCTAGGGAAGCCACA
LOC_Os03g19860
Os.54749.1.S1_at--405--9071Chr03:11149575..11149599 (25 bp)
TGCTAGGGAAGCCACAGTTCTGTGC
LOC_Os03g19860
Target Sequence 
GCCGTTGACGCTTGCCCCGTTTGCGCCGCCACCAAGATCGCCTCCGTCCATGTCCTCCTTTCCTGAAGTCACTCACATGT
GCCACACCAGCTACTGCATGGAGTAGGAGATTTCGATAGCGCAACAGCTGTGGCCAGACCGAAACCAGGCATCCGTCAGC
CAACTCCGGTGTCAAGCAAGCTAACAACAATCATCCTGTCCCAAGTTACATGGAAATTCATGCTAGGGAAGCCACAGTTC
TGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis