Browse Element(s) Details


Os.54754.1.S1_at

Description gb:AK106688.1
DB_XREF= gi:32991897
TID=Os.54754.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C04, full insert sequence.
FL= gb:AK106688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1904011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18980NANA2+11089999..11091500retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18990OsAffx.24316.1.S1_at11/112+11093807..11097790GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g19000Os.52113.1.S1_at1/112+11101207..11102628hypothetical protein
LOC_Os02g19010OsAffx.6125.1.S1_at10/112+11104424..11106448hypothetical protein
LOC_Os02g19020NANA2+11109192..11109682hypothetical protein
LOC_Os02g19030OsAffx.24317.5.S1_x_at1/112+11111073..11113176hypothetical protein
LOC_Os02g19040Os.54754.1.S1_at11/112+11116174..11120331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g19050OsAffx.12114.1.S1_at11/112+11124176..11124706hypothetical protein
LOC_Os02g19060Os.54861.1.S1_x_at11/112+11126245..11127512expressed protein
LOC_Os02g19060Os.54861.1.S1_at11/112+11126245..11127512expressed protein
LOC_Os02g19070OsAffx.24319.1.S1_at11/112+11130262..11130525hypothetical protein
LOC_Os02g19080NANA2+11136439..11138091retrotransposon protein, putative, unclassified
LOC_Os02g19090NANA2+11139485..11141853retrotransposon protein, putative, unclassified
LOC_Os02g19100NANA2+11142530..11146040retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54754.1.S1_at--170--691Chr02:11119606..11119630 (25 bp)
ATGACTCCATGAACAGTCTCGCTAG
LOC_Os02g19040
Os.54754.1.S1_at--514--7611Chr02:11119630..11119654 (25 bp)
GGGAATTCAACGATGGCCTCAAGCC
LOC_Os02g19040
Os.54754.1.S1_at--192--1591Chr02:11119671..11119695 (25 bp)
AGCTCTCAGCTGAGTGGTCTCTCCT
LOC_Os02g19040
Os.54754.1.S1_at--291--6791Chr02:11119981..11120005 (25 bp)
GTTTTGGGATCTTTCTTACACGACT
LOC_Os02g19040
Os.54754.1.S1_at--430--10491Chr02:11119996..11120020 (25 bp)
TTACACGACTGAGCGGGCTGCTAAG
LOC_Os02g19040
Os.54754.1.S1_at--947--9991Chr02:11120022..11120046 (25 bp)
TAGCCGCCTCTGCATTTTACGATGG
LOC_Os02g19040
Os.54754.1.S1_at--807--6411Chr02:11120114..11120138 (25 bp)
GATCTTTTCGTGTTGCAAGTCCATT
LOC_Os02g19040
Os.54754.1.S1_at--1154--1851Chr02:11120140..11120164 (25 bp)
ACGAGTAGTTGATCAGGTTTTCCTG
LOC_Os02g19040
Os.54754.1.S1_at--462--7471Chr02:11120174..11120198 (25 bp)
GTGTGCTTTCCTTAATTTTCATCAT
LOC_Os02g19040
Os.54754.1.S1_at--98--431Chr02:11120194..11120218 (25 bp)
ATCATCTTTTTTGTATGCCTCTGGA
LOC_Os02g19040
Os.54754.1.S1_at--845--10151Chr02:11120307..11120331 (25 bp)
TATAATCGACGTTTTTGTTTCAGTG
LOC_Os02g19040
Target Sequence 
ATGACTCCATGAACAGTCTCGCTAGGGAATTCAACGATGGCCTCAAGCCCCTCTTTTCCAATCTCAGCTCTCAGCTGAGT
GGTCTCTCCTACTCCATCGCCGACTTCTACGCATTCTCAAATGCCACCTTCATGAACCCTCGGGCTTACGGGTTTGTGAA
CATCAACAGCACATGCTGTATTCCCCCCTGCACACCTGAACATGAACCACCCTGCCAAAACCGCAAGCAGTACTGGTTTT
GGGATCTTTCTTACACGACTGAGCGGGCTGCTAAGCTAGCCGCCTCTGCATTTTACGATGGCCCTGCCCGGTTCACTGCG
CCGGTTAACTTCAAGCGATTGATAAAGATGAAATGATTTTATAATAAAGATCTTTTCGTGTTGCAAGTCCATTGACGAGT
AGTTGATCAGGTTTTCCTGGGTGTGTATGTGTGCTTTCCTTAATTTTCATCATCTTTTTTGTATGCCTCTGGATTGGTAA
TTTGGTATATATATGTATGAATTCCATGCTAAGGAATGTGTCACAATAAGTTGATCGATAAGAAGAATAAACCCAACTAT
ATATAATCGACGTTTTTGTTTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis