Browse Element(s) Details


Os.54774.1.S1_x_at

Description gb:AK106732.1
DB_XREF= gi:32991941
TID=Os.54774.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H11, full insert sequence.
FL= gb:AK106732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g237003/11retrotransposon, putative, centromere-specific
LOC_Os11g289703/11retrotransposon, putative, centromere-specific
LOC_Os09g038702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g402602/11retrotransposon, putative, centromere-specific
LOC_Os03g373772/11retrotransposon, putative, centromere-specific
LOC_Os03g320702/11retrotransposon, putative, centromere-specific
LOC_Os09g092792/11
LOC_Os11g127102/11retrotransposon, putative, centromere-specific
LOC_Os08g300502/11retrotransposon, putative, centromere-specific
LOC_Os10g092802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g388302/11retrotransposon, putative, centromere-specific
LOC_Os04g057902/11retrotransposon, putative, centromere-specific
LOC_Os03g359902/11retrotransposon, putative, centromere-specific
LOC_Os11g318602/11retrotransposon, putative, centromere-specific
LOC_Os05g200902/11retrotransposon protein, putative, unclassified
LOC_Os12g221702/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g206402/11retrotransposon, putative, centromere-specific
LOC_Os03g315422/11retrotransposon, putative, centromere-specific
LOC_Os05g209702/11retrotransposon, putative, centromere-specific
LOC_Os11g127202/11retrotransposon, putative, centromere-specific
LOC_Os03g121002/11retrotransposon, putative, centromere-specific, expressed
LOC_Os02g174902/11retrotransposon, putative, centromere-specific
LOC_Os11g253802/11retrotransposon, putative, centromere-specific
LOC_Os06g335102/11retrotransposon, putative, centromere-specific
LOC_Os07g202602/11hypothetical protein
LOC_Os03g388402/11retrotransposon, putative, centromere-specific
LOC_Os02g284801/11retrotransposon, putative, centromere-specific
LOC_Os10g102301/11retrotransposon, putative, centromere-specific
LOC_Os03g388801/11retrotransposon, putative, centromere-specific
LOC_Os10g206901/11hypothetical protein
LOC_Os03g451101/11retrotransposon, putative, centromere-specific
LOC_Os03g438141/11retrotransposon, putative, centromere-specific
LOC_Os02g196101/11retrotransposon, putative, centromere-specific
LOC_Os03g500201/11retrotransposon, putative, centromere-specific
LOC_Os01g294881/11retrotransposon, putative, centromere-specific
LOC_Os04g178101/11retrotransposon, putative, centromere-specific
LOC_Os07g209301/11retrotransposon, putative, centromere-specific
LOC_Os07g207301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g108101/11retrotransposon, putative, centromere-specific
LOC_Os08g215201/11retrotransposon, putative, centromere-specific
LOC_Os04g178201/11retrotransposon, putative, centromere-specific
LOC_Os01g313001/11retrotransposon, putative, centromere-specific
LOC_Os07g209401/11retrotransposon, putative, centromere-specific
LOC_Os02g272701/11retrotransposon, putative, centromere-specific
LOC_Os11g220301/11retrotransposon, putative, centromere-specific
LOC_Os09g064801/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23630Os.45976.1.S1_x_at2/117+13350219..13351802transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630Os.45976.1.S1_at2/117+13350219..13351802transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23640Os.10497.1.S1_s_at11/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640Os.54579.1.S1_s_at8/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640Os.54579.1.S1_x_at3/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23649NANA7+13357371..13357521NA
LOC_Os07g23660Os.10497.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_x_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.51813.1.S1_at1/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23670OsAffx.5416.1.S1_at11/117+13368122..13368470hypothetical protein
LOC_Os07g23670OsAffx.5416.1.S1_x_at10/117+13368122..13368470hypothetical protein
LOC_Os07g23680NANA7+13370115..13370972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23690OsAffx.16383.1.S1_at11/117+13371611..13372025late embryogenesis abundant protein, putative
LOC_Os07g23700Os.54774.1.S1_x_at3/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23700Os.54774.1.S1_at2/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23710Os.9017.1.S1_x_at3/117+13381137..13382436Cytochrome P450 family protein
LOC_Os07g23720Os.51151.1.S1_at11/117+13382752..13384349K+ channel tetramerisation domain containing protein, expressed
LOC_Os07g23730Os.52889.1.S1_at11/117+13387132..13390394Thaumatin family protein, expressed
LOC_Os07g23740OsAffx.28558.1.S1_at11/117+13398473..13400871hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54774.1.S1_x_at--753--9471Chr07:14713870..14713894 (25 bp)
TCTGCAAGAAGGTGGTGCTAATCTC
NONE
Os.54774.1.S1_x_at--851--1051Chr07:14713861..14713885 (25 bp)
AGGTGGTGCTAATCTCAGCGCATTA
NONE
Os.54774.1.S1_x_at--913--2736Chr07:7768644..7768922 (25 bp)
AAGAAGGAAGTGATGTGACCATGGC
NONE
Os.54774.1.S1_x_at--448--79522Chr10:10138271..10138291 (21 bp)
GGATACAACCGTTGCTCACATATAG
LOC_Os10g20690
Os.54774.1.S1_x_at--988--47146Chr11:13968042..13968073 (25 bp)
GCTGGAATCCGATTCTGCTACACTG
LOC_Os11g25380
Os.54774.1.S1_x_at--100--52757Chr11:12188320..12188351 (25 bp)
GAATCCGATTCTGCTACACTGCTGA
LOC_Os11g22030
Os.54774.1.S1_x_at--961--531Chr07:14713611..14713635 (25 bp)
ATCCCCGAATTCCATCTTGTTTTGA
NONE
Os.54774.1.S1_x_at--529--5211Chr07:14713605..14713629 (25 bp)
GAATTCCATCTTGTTTTGACGCAAT
NONE
Os.54774.1.S1_x_at--983--9231Chr07:14713601..14713625 (25 bp)
TCCATCTTGTTTTGACGCAATCACA
NONE
Os.54774.1.S1_x_at--105--3651Chr07:14713416..14713440 (25 bp)
CTTCAGGGTTGCTTAGGGTTTTGAT
NONE
Os.54774.1.S1_x_at--767--7251Chr07:14713336..14713360 (25 bp)
GTCCATCTGCTTGTTCGAAACCTCA
NONE
Target Sequence 
TCTGCAAGAAGGTGGTGCTAATCTCAGCGCATTAGAATTAAGAAGGAAGTGATGTGACCATGGCTACTATGGATACAACC
GTTGCTCACATATAGATGAACAACAAGATATTAAGTTCAAGTCCTCCAAGTGCTGGAATCCGATTCTGCTACACTGCTGA
CTTCAAACGGCCACCAAATCTGCATACGACCTCCGTTTTCGGCCCGTGAGTACTTGATGGAAAGCTCTCGGAGTCGTCTT
TCCAACGGATCCAGCATCATCCCCGAATTCCATCTTGTTTTGACGCAATCACAAAAACAAGGTGCTGCGTCACCTGTCAT
GGGCCTTTGGGCTTGTAACTTCGTTTGGGACCCCGGCCCAAGTGGGGCCCAGTGGGGTGCGCCCCAATCTGGTAGAGCAC
GACCCTAGGATCCTCTTGGTCGTTCTCGCACCCCTATAAGTAGCCAGATACCCCTTCAGGGTTGCTTAGGGTTTTGATTA
ATTGTAAGTTTAGCCATTGCTACTTAGCTTGCAGCGCGCATGTCGGCTAGACCGTCCATCTGCTTGTTCGAAACCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54774.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis