Browse Element(s) Details


Os.54796.1.S1_at

Description gb:AK106788.1
DB_XREF= gi:32991997
TID=Os.54796.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-A03, full insert sequence.
FL= gb:AK106788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0911011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09050Os.51833.1.S1_x_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.3.S1_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.2.S1_at10/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.1782.1.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.27499.3.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09060Os.1984.1.S1_at11/117+4732926..4739754methylmalonate-semialdehyde dehydrogenase, putative, expressed
LOC_Os07g09070OsAffx.16164.1.S1_at11/117+4742360..4743824hypothetical protein
LOC_Os07g09080NANA7+4748547..4750293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09090OsAffx.28357.1.S1_at11/117+4751594..4753518hypothetical protein
LOC_Os07g09100OsAffx.5259.1.S1_at11/117+4754149..4755372hypothetical protein
LOC_Os07g09110Os.54796.1.S1_at11/117+4756823..4758571F-box domain containing protein
LOC_Os07g09120OsAffx.16165.1.S1_at10/117+4761684..4763355expressed protein
LOC_Os07g09130OsAffx.5260.1.S1_at11/117+4768188..4769199CHCH domain containing protein
LOC_Os07g09140Os.14360.1.S1_x_at11/117+4771351..4772709expressed protein
LOC_Os07g09140OsAffx.16166.1.S1_at11/117+4771351..4772709expressed protein
LOC_Os07g09150Os.10750.1.S1_at11/117+4772903..4774911expressed protein
LOC_Os07g09150Os.35273.2.S1_x_at1/117+4772903..4774911expressed protein
LOC_Os07g09150Os.14360.1.S1_x_at1/117+4772903..4774911expressed protein
LOC_Os07g09160NANA7+4776289..4776692hypothetical protein
LOC_Os07g09170Os.47463.1.S1_x_at5/117+4780584..4784284transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09170Os.14491.2.S1_x_at5/117+4780584..4784284transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54796.1.S1_at--846--10791Chr07:4757429..4757453 (25 bp)
TTGTTGCAGAATATCACCATCGGAC
LOC_Os07g09110
Os.54796.1.S1_at--223--10431Chr07:4757388..4757412 (25 bp)
TTAGAATGCCCACGGAAGATCCAGG
LOC_Os07g09110
Os.54796.1.S1_at--1069--411Chr07:4757315..4757339 (25 bp)
ATCATTACCATCATTTCTGAGGCCC
LOC_Os07g09110
Os.54796.1.S1_at--1109--9531Chr07:4757273..4757297 (25 bp)
TCTTAACGAACGGTACTGTGGTCAA
LOC_Os07g09110
Os.54796.1.S1_at--565--2091Chr07:4757211..4757235 (25 bp)
ACATCCTGCCGAATCTGAACTATGA
LOC_Os07g09110
Os.54796.1.S1_at--898--5831Chr07:4757169..4757193 (25 bp)
GACCTTGGGTCTTACAACATTATAA
LOC_Os07g09110
Os.54796.1.S1_at--910--2991Chr07:4757038..4757062 (25 bp)
AATGATAATGTTCTTGAGCCTGGAA
LOC_Os07g09110
Os.54796.1.S1_at--1107--1671Chr07:4757022..4757046 (25 bp)
AGCCTGGAAGTATGCGCGAGAATTG
LOC_Os07g09110
Os.54796.1.S1_at--181--5211Chr07:4757003..4757027 (25 bp)
GAATTGCTATATCTATTTCCTTGGA
LOC_Os07g09110
Os.54796.1.S1_at--311--1251Chr07:4756964..4756988 (25 bp)
AGATATCGTCTTCTTAGGTGATGAA
LOC_Os07g09110
Os.54796.1.S1_at--241--5232Chr07:4756942..4756966 (25 bp)
GAATTTGACAGAGTGCTAGCCTATA
LOC_Os07g09110
Target Sequence 
TTGTTGCAGAATATCACCATCGGACAATAAGTATCGAGTAATTAGAATGCCCACGGAAGATCCAGGAGATACACAATTTT
ATCTAGGAAAATCAAACAACGGGATATATTGTGCATCATTACCATCATTTCTGAGGCCCCAAATTTTGGTTTGGTTTCTT
AACGAACGGTACTGTGGTCAAACCGAGTGGGTGTTGAAGCATGATATGGACATTTCCCACATCCTGCCGAATCTGAACTA
TGATGAGCAGCAGCGTGATGGACCTTGGGTCTTACAACATTATAATTATAGACCTTTTAATTTTAATTATGATGATGATG
ATGACGAAGACGATGTGGAGCTCGAGCCAATAGTGGAAGAGAAATTCGAGAAATTTGAGTGGGACTCTGACAATGATAAT
GTTCTTGAGCCTGGAAGTATGCGCGAGAATTGCTATATCTATTTCCTTGGATTTCATCCTTACAAAGATATCGTCTTCTT
AGGTGATGAATTTGACAGAGTGCTAGCCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis