Browse Element(s) Details


Os.54833.1.S1_at

Description gb:AK106861.1
DB_XREF= gi:32992070
TID=Os.54833.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C04, full insert sequence.
FL= gb:AK106861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1421011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14150Os.6021.1.S1_at11/113+7660578..7661891expressed protein
LOC_Os03g14160OsAffx.12854.1.S1_at11/113+7662468..7663255hypothetical protein
LOC_Os03g14170Os.27934.2.S1_x_at11/113+7665799..7667895senescence-associated protein 15, putative, expressed
LOC_Os03g14180Os.8926.1.S1_at11/113+7676068..7677322Small heat shock protein, chloroplast precursor, putative, expressed
LOC_Os03g14190OsAffx.3236.1.S1_at11/113+7677930..7678523RNA-binding region containing protein 1, putative
LOC_Os03g14210Os.54833.1.S1_at11/113+7686822..7689579Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g14220OsAffx.3237.1.S1_at11/113+7693927..7694867hypothetical protein
LOC_Os03g14220OsAffx.24649.2.S1_x_at4/113+7693927..7694867hypothetical protein
LOC_Os03g14230OsAffx.3238.1.S1_at10/113+7699683..7700771hypothetical protein
LOC_Os03g14230Os.17546.1.S1_a_at1/113+7699683..7700771hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54833.1.S1_at--457--4491Chr03:7688377..7688401 (25 bp)
GCCGGTGTACGAGCTCTCCTACAAG
LOC_Os03g14210
Os.54833.1.S1_at--23--8231Chr03:7688319..7688343 (25 bp)
GGCAACTCCGGTTGGAGATTCCCCG
LOC_Os03g14210
Os.54833.1.S1_at--365--9431Chr03:7688276..7688300 (25 bp)
TCAGCGGCGGTTACGACAACAACGG
LOC_Os03g14210
Os.54833.1.S1_at--390--10491Chr03:7688249..7688273 (25 bp)
TTAACAGCGGCTACTACGACATCTC
LOC_Os03g14210
Os.54833.1.S1_at--76--4151Chr03:7687058..7687079 (22 bp)
CGCGGGTCCGTGTAGATGGTCACAA
LOC_Os03g14210
Os.54833.1.S1_at--889--6031Chr03:7686990..7687014 (25 bp)
GAGATCGTCAAGTGGTGTCAACTCT
LOC_Os03g14210
Os.54833.1.S1_at--463--7751Chr03:7686977..7687001 (25 bp)
GGTGTCAACTCTCGTCTTGATGGAA
LOC_Os03g14210
Os.54833.1.S1_at--981--831Chr03:7686922..7686946 (25 bp)
ATGGAACGGCATGCAGGATGCTCCG
LOC_Os03g14210
Os.54833.1.S1_at--353--6591Chr03:7686884..7686908 (25 bp)
GATTGCCATGACTTGTGGTGCCCCA
LOC_Os03g14210
Os.54833.1.S1_at--571--7291Chr03:7686867..7686891 (25 bp)
GTGCCCCAGTGTTTGTTGTGTTCGC
LOC_Os03g14210
Os.54833.1.S1_at--1161--7411Chr03:7686850..7686874 (25 bp)
GTGTTCGCTGAGACCACAATGTGGG
LOC_Os03g14210
Target Sequence 
GCCGGTGTACGAGCTCTCCTACAAGCTCCCGCGCGACAACTCCACGTTCGGTGGCGCCGGCAACTCCGGTTGGAGATTCC
CCGGAGGTGGTGGCGGCAATGTCAGCGGCGGTTACGACAACAACGGAGTTAACAGCGGCTACTACGACATCTCGGCGGCA
TCGCCGGATTCCGCGGGTCCGTGTAGATGGTCACAAGCGGCAGTGGCAGGAGCAATGGCTGTCCTGGTGGTAGCAGCGTG
AGATCGTCAAGTGGTGTCAACTCTCGTCTTGATGGAAGAAAGTTGGGGTAGGTAGATAAAAAATGAAATGGAACGGCATG
CAGGATGCTCCGGGGCCATGGTATTGATTGCCATGACTTGTGGTGCCCCAGTGTTTGTTGTGTTCGCTGAGACCACAATG
TGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis